miRNA display CGI


Results 21 - 40 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28826 5' -57.1 NC_006146.1 + 15518 0.67 0.830785
Target:  5'- cUGGacaCAUGAgCCAggcGCCGGGGCCUu- -3'
miRNA:   3'- -ACCg--GUACU-GGUau-CGGUUCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 15707 0.67 0.830785
Target:  5'- aGGCCA-GGCCAccuuagacccGGCC-AGGCCCc- -3'
miRNA:   3'- aCCGGUaCUGGUa---------UCGGuUCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 15799 0.7 0.636726
Target:  5'- cGGCCAUuggGGCCAgcaagcgagaccAGCCcaGAGGCCCGa -3'
miRNA:   3'- aCCGGUA---CUGGUa-----------UCGG--UUCCGGGUc -5'
28826 5' -57.1 NC_006146.1 + 16925 0.66 0.83906
Target:  5'- cGGCCGgaggGACCccGGC---GGCCCGGu -3'
miRNA:   3'- aCCGGUa---CUGGuaUCGguuCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 17701 0.68 0.749163
Target:  5'- cGGcCCGUGGC---GGCCAAGcGCCUGGg -3'
miRNA:   3'- aCC-GGUACUGguaUCGGUUC-CGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 18500 0.66 0.86947
Target:  5'- -uGCCAUgGGCCAgGGCCAGGGgcaaaacauuacuCCCAu -3'
miRNA:   3'- acCGGUA-CUGGUaUCGGUUCC-------------GGGUc -5'
28826 5' -57.1 NC_006146.1 + 18596 0.67 0.830785
Target:  5'- cUGGacaCAUGAgCCAggcGCCGGGGCCUu- -3'
miRNA:   3'- -ACCg--GUACU-GGUau-CGGUUCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 18785 0.67 0.830785
Target:  5'- aGGCCA-GGCCAccuuagacccGGCC-AGGCCCc- -3'
miRNA:   3'- aCCGGUaCUGGUa---------UCGGuUCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 18877 0.7 0.636726
Target:  5'- cGGCCAUuggGGCCAgcaagcgagaccAGCCcaGAGGCCCGa -3'
miRNA:   3'- aCCGGUA---CUGGUa-----------UCGG--UUCCGGGUc -5'
28826 5' -57.1 NC_006146.1 + 18986 0.66 0.862727
Target:  5'- cGGCag-GGCCGgAGCCAgaccccaguggGGGCCCc- -3'
miRNA:   3'- aCCGguaCUGGUaUCGGU-----------UCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 19885 0.7 0.63775
Target:  5'- gUGGCCAacuuUGACU--GGCCcuacguccuggacAGGGCCCGGc -3'
miRNA:   3'- -ACCGGU----ACUGGuaUCGG-------------UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 20002 0.66 0.83906
Target:  5'- cGGCCGgaggGACCccGGC---GGCCCGGu -3'
miRNA:   3'- aCCGGUa---CUGGuaUCGguuCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 20338 0.68 0.748197
Target:  5'- aUGGCCAgcagauccgcgUGuucuccuGCCuccUGGCCGcGGCCCAGa -3'
miRNA:   3'- -ACCGGU-----------AC-------UGGu--AUCGGUuCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 20896 0.69 0.699798
Target:  5'- gGGCCAaGGCCuucGUgGAGGCCCuGa -3'
miRNA:   3'- aCCGGUaCUGGuauCGgUUCCGGGuC- -5'
28826 5' -57.1 NC_006146.1 + 21674 0.67 0.830785
Target:  5'- cUGGacaCAUGAgCCAggcGCCGGGGCCUu- -3'
miRNA:   3'- -ACCg--GUACU-GGUau-CGGUUCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 21863 0.67 0.830785
Target:  5'- aGGCCA-GGCCAccuuagacccGGCC-AGGCCCc- -3'
miRNA:   3'- aCCGGUaCUGGUa---------UCGGuUCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 21963 0.69 0.689718
Target:  5'- gGGCCAgcaagcgaGACC--AGCCcaGAGGCCCGa -3'
miRNA:   3'- aCCGGUa-------CUGGuaUCGG--UUCCGGGUc -5'
28826 5' -57.1 NC_006146.1 + 22736 0.71 0.59787
Target:  5'- gUGGgCAUGGCCGUAGagaagaCCcGGGCCCuGa -3'
miRNA:   3'- -ACCgGUACUGGUAUC------GGuUCCGGGuC- -5'
28826 5' -57.1 NC_006146.1 + 23080 0.66 0.83906
Target:  5'- cGGCCGgaggGACCccGGC---GGCCCGGu -3'
miRNA:   3'- aCCGGUa---CUGGuaUCGguuCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 23470 0.77 0.297184
Target:  5'- aGGCCcUGGCCGUGGCCAgguacgggcugguGGGCUCGc -3'
miRNA:   3'- aCCGGuACUGGUAUCGGU-------------UCCGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.