miRNA display CGI


Results 1 - 20 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28826 5' -57.1 NC_006146.1 + 170679 0.69 0.70582
Target:  5'- aGGCCAggggcgccccgggGACCGUcGCgGGGGCaCCGGc -3'
miRNA:   3'- aCCGGUa------------CUGGUAuCGgUUCCG-GGUC- -5'
28826 5' -57.1 NC_006146.1 + 170377 0.67 0.786859
Target:  5'- aGGCCGUGugUGgaGGCCGggccuccccuggGGGCCuCGGg -3'
miRNA:   3'- aCCGGUACugGUa-UCGGU------------UCCGG-GUC- -5'
28826 5' -57.1 NC_006146.1 + 170200 0.7 0.628536
Target:  5'- gGGCCggGGCCuggcgggGGCCAgcgcgGGGuCCCGGg -3'
miRNA:   3'- aCCGGuaCUGGua-----UCGGU-----UCC-GGGUC- -5'
28826 5' -57.1 NC_006146.1 + 169446 0.67 0.786859
Target:  5'- aGGCCGUGugUGgaGGCCGggccuccccuggGGGCCuCGGg -3'
miRNA:   3'- aCCGGUACugGUa-UCGGU------------UCCGG-GUC- -5'
28826 5' -57.1 NC_006146.1 + 169413 0.7 0.659226
Target:  5'- aGGCCGgcuGCCAUGGUCAggAGGCCa-- -3'
miRNA:   3'- aCCGGUac-UGGUAUCGGU--UCCGGguc -5'
28826 5' -57.1 NC_006146.1 + 169269 0.7 0.628536
Target:  5'- gGGCCggGGCCuggcgggGGCCAgcgcgGGGuCCCGGg -3'
miRNA:   3'- aCCGGuaCUGGua-----UCGGU-----UCC-GGGUC- -5'
28826 5' -57.1 NC_006146.1 + 168514 0.67 0.786859
Target:  5'- aGGCCGUGugUGgaGGCCGggccuccccuggGGGCCuCGGg -3'
miRNA:   3'- aCCGGUACugGUa-UCGGU------------UCCGG-GUC- -5'
28826 5' -57.1 NC_006146.1 + 168337 0.7 0.628536
Target:  5'- gGGCCggGGCCuggcgggGGCCAgcgcgGGGuCCCGGg -3'
miRNA:   3'- aCCGGuaCUGGua-----UCGGU-----UCC-GGGUC- -5'
28826 5' -57.1 NC_006146.1 + 167644 0.67 0.786859
Target:  5'- gGGCCc-GGCgCGU-GCCGGGGgCCCGGg -3'
miRNA:   3'- aCCGGuaCUG-GUAuCGGUUCC-GGGUC- -5'
28826 5' -57.1 NC_006146.1 + 167638 0.69 0.729661
Target:  5'- cGGCuCGUGGCCugcGCCGuccccAGGCCCc- -3'
miRNA:   3'- aCCG-GUACUGGuauCGGU-----UCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 167582 0.67 0.786859
Target:  5'- aGGCCGUGugUGgaGGCCGggccuccccuggGGGCCuCGGg -3'
miRNA:   3'- aCCGGUACugGUa-UCGGU------------UCCGG-GUC- -5'
28826 5' -57.1 NC_006146.1 + 167405 0.7 0.628536
Target:  5'- gGGCCggGGCCuggcgggGGCCAgcgcgGGGuCCCGGg -3'
miRNA:   3'- aCCGGuaCUGGua-----UCGGU-----UCC-GGGUC- -5'
28826 5' -57.1 NC_006146.1 + 166901 0.67 0.81108
Target:  5'- aGGCCGcguucaucagcgccUcGACCAUGGCCAgcuuGGuGCCCu- -3'
miRNA:   3'- aCCGGU--------------A-CUGGUAUCGGU----UC-CGGGuc -5'
28826 5' -57.1 NC_006146.1 + 166691 0.66 0.877476
Target:  5'- aGGCCGUGACCAccaccgucaUGaagccgguucccGCCGAG-CCCGu -3'
miRNA:   3'- aCCGGUACUGGU---------AU------------CGGUUCcGGGUc -5'
28826 5' -57.1 NC_006146.1 + 165683 0.7 0.649007
Target:  5'- aGGCCGgcaagGACCugcaccccUAGCUcccccAGGCCCAGg -3'
miRNA:   3'- aCCGGUa----CUGGu-------AUCGGu----UCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 165462 0.67 0.786859
Target:  5'- aUGGCCAguaggaaGGCCAggcagaaGGCCAGGauuGUCCAGa -3'
miRNA:   3'- -ACCGGUa------CUGGUa------UCGGUUC---CGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 164497 0.67 0.813701
Target:  5'- gGGCCAaaggGACCccAUGGCCcaaGAGGaCCGGu -3'
miRNA:   3'- aCCGGUa---CUGG--UAUCGG---UUCCgGGUC- -5'
28826 5' -57.1 NC_006146.1 + 164446 0.75 0.354777
Target:  5'- gGGCCGUGGuuguuguuggggccCCAUGGaccCCAGGGCCCAc -3'
miRNA:   3'- aCCGGUACU--------------GGUAUC---GGUUCCGGGUc -5'
28826 5' -57.1 NC_006146.1 + 161854 0.69 0.689718
Target:  5'- -uGCCGUGAgCUAUAGCCuuuGGCCUg- -3'
miRNA:   3'- acCGGUACU-GGUAUCGGuu-CCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 160931 0.66 0.838241
Target:  5'- gUGGCCugcGUGagguaaguaggucGCCAUGGCCAGGcuuuucGCUCAGc -3'
miRNA:   3'- -ACCGG---UAC-------------UGGUAUCGGUUC------CGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.