miRNA display CGI


Results 1 - 20 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28826 5' -57.1 NC_006146.1 + 54044 0.82 0.149758
Target:  5'- cGGCCAUGucgGCgGUGGUCAGGGCCCAc -3'
miRNA:   3'- aCCGGUAC---UGgUAUCGGUUCCGGGUc -5'
28826 5' -57.1 NC_006146.1 + 34059 0.73 0.479171
Target:  5'- cGGCCGgggGucCCGUGGCaCGGGGCCgGGg -3'
miRNA:   3'- aCCGGUa--Cu-GGUAUCG-GUUCCGGgUC- -5'
28826 5' -57.1 NC_006146.1 + 94791 0.72 0.507931
Target:  5'- gGGCCAcGuCCAcguaGGCC-AGGCCCGGg -3'
miRNA:   3'- aCCGGUaCuGGUa---UCGGuUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 110103 0.66 0.877476
Target:  5'- cGGUCcgGACCA-GGCCcuggaccuGGUCCGGc -3'
miRNA:   3'- aCCGGuaCUGGUaUCGGuu------CCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 67207 0.75 0.357143
Target:  5'- cUGGCCGUGGCCGgucgccUGGCCGgccAGGCaCAGg -3'
miRNA:   3'- -ACCGGUACUGGU------AUCGGU---UCCGgGUC- -5'
28826 5' -57.1 NC_006146.1 + 47401 0.75 0.365109
Target:  5'- gGGUC--GACCGUGGCCAGGGCCa-- -3'
miRNA:   3'- aCCGGuaCUGGUAUCGGUUCCGGguc -5'
28826 5' -57.1 NC_006146.1 + 147980 0.75 0.381406
Target:  5'- aUGGUCGUGugCAUGGCCcucguGGGGCCUu- -3'
miRNA:   3'- -ACCGGUACugGUAUCGG-----UUCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 41576 0.74 0.398181
Target:  5'- cGGCCGccuacuggcUGGCCGaGGCggaGAGGCCCGGg -3'
miRNA:   3'- aCCGGU---------ACUGGUaUCGg--UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 138866 0.73 0.459522
Target:  5'- gGGUCAUGACCugGGCCAgcgccucgucccgAGGCCCc- -3'
miRNA:   3'- aCCGGUACUGGuaUCGGU-------------UCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 44705 0.73 0.469762
Target:  5'- cGGCgGUGGCCGUGGCCcccgcuGGCCg-- -3'
miRNA:   3'- aCCGgUACUGGUAUCGGuu----CCGGguc -5'
28826 5' -57.1 NC_006146.1 + 160681 0.73 0.460448
Target:  5'- cGGCaCAUGACCAgGGCCGguagaggcAGGUCCGu -3'
miRNA:   3'- aCCG-GUACUGGUaUCGGU--------UCCGGGUc -5'
28826 5' -57.1 NC_006146.1 + 68924 0.74 0.44212
Target:  5'- aUGGaCGaGACCGgGGCCuGGGCCCAGg -3'
miRNA:   3'- -ACCgGUaCUGGUaUCGGuUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 41849 0.77 0.304847
Target:  5'- gGGCCGUGGCCAggGGCUAccgGGGCCUc- -3'
miRNA:   3'- aCCGGUACUGGUa-UCGGU---UCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 90874 0.73 0.469762
Target:  5'- uUGGCUAUGcACCcgAGCCu-GGCCCu- -3'
miRNA:   3'- -ACCGGUAC-UGGuaUCGGuuCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 147439 0.77 0.304847
Target:  5'- cUGGCCAcGGCCAgGGCCucguAGGCCgAGa -3'
miRNA:   3'- -ACCGGUaCUGGUaUCGGu---UCCGGgUC- -5'
28826 5' -57.1 NC_006146.1 + 47634 0.74 0.433112
Target:  5'- gGGCCAcgagccgucucUGGCCGcGGCCc-GGCCCAGc -3'
miRNA:   3'- aCCGGU-----------ACUGGUaUCGGuuCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 106198 0.73 0.469762
Target:  5'- gGGuCCcgGGCCuccuGCCAGGGCCUGGu -3'
miRNA:   3'- aCC-GGuaCUGGuau-CGGUUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 55461 0.73 0.488671
Target:  5'- gUGGCCAcccgcucgaUGGCCGcgGGCgagaaCGAGGCCCGGc -3'
miRNA:   3'- -ACCGGU---------ACUGGUa-UCG-----GUUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 164446 0.75 0.354777
Target:  5'- gGGCCGUGGuuguuguuggggccCCAUGGaccCCAGGGCCCAc -3'
miRNA:   3'- aCCGGUACU--------------GGUAUC---GGUUCCGGGUc -5'
28826 5' -57.1 NC_006146.1 + 113684 0.75 0.373197
Target:  5'- gGGCCcgGGCCc-GGCCuccGGCCCGGg -3'
miRNA:   3'- aCCGGuaCUGGuaUCGGuu-CCGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.