miRNA display CGI


Results 21 - 40 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28826 5' -57.1 NC_006146.1 + 98226 0.72 0.527504
Target:  5'- gGGgCAUGG-CGUAGCCGGGGUgCAGg -3'
miRNA:   3'- aCCgGUACUgGUAUCGGUUCCGgGUC- -5'
28826 5' -57.1 NC_006146.1 + 94791 0.72 0.507931
Target:  5'- gGGCCAcGuCCAcguaGGCC-AGGCCCGGg -3'
miRNA:   3'- aCCGGUaCuGGUa---UCGGuUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 68924 0.74 0.44212
Target:  5'- aUGGaCGaGACCGgGGCCuGGGCCCAGg -3'
miRNA:   3'- -ACCgGUaCUGGUaUCGGuUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 164446 0.75 0.354777
Target:  5'- gGGCCGUGGuuguuguuggggccCCAUGGaccCCAGGGCCCAc -3'
miRNA:   3'- aCCGGUACU--------------GGUAUC---GGUUCCGGGUc -5'
28826 5' -57.1 NC_006146.1 + 93439 0.71 0.587688
Target:  5'- gGGCCuUGGCUAUGGUCAuGGCCa-- -3'
miRNA:   3'- aCCGGuACUGGUAUCGGUuCCGGguc -5'
28826 5' -57.1 NC_006146.1 + 109172 0.71 0.557365
Target:  5'- cGGUCccGGCCcuUAGUCuGAGGCCCAGa -3'
miRNA:   3'- aCCGGuaCUGGu-AUCGG-UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 34059 0.73 0.479171
Target:  5'- cGGCCGgggGucCCGUGGCaCGGGGCCgGGg -3'
miRNA:   3'- aCCGGUa--Cu-GGUAUCG-GUUCCGGgUC- -5'
28826 5' -57.1 NC_006146.1 + 147439 0.77 0.304847
Target:  5'- cUGGCCAcGGCCAgGGCCucguAGGCCgAGa -3'
miRNA:   3'- -ACCGGUaCUGGUaUCGGu---UCCGGgUC- -5'
28826 5' -57.1 NC_006146.1 + 148144 0.72 0.547352
Target:  5'- gGGCUucGugC-UGGUCAGGGCCCGGg -3'
miRNA:   3'- aCCGGuaCugGuAUCGGUUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 41849 0.77 0.304847
Target:  5'- gGGCCGUGGCCAggGGCUAccgGGGCCUc- -3'
miRNA:   3'- aCCGGUACUGGUa-UCGGU---UCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 55461 0.73 0.488671
Target:  5'- gUGGCCAcccgcucgaUGGCCGcgGGCgagaaCGAGGCCCGGc -3'
miRNA:   3'- -ACCGGU---------ACUGGUa-UCG-----GUUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 99031 0.72 0.527504
Target:  5'- cGGCCGUGuagagGCCcc--CCAGGGCCCGGc -3'
miRNA:   3'- aCCGGUAC-----UGGuaucGGUUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 90874 0.73 0.469762
Target:  5'- uUGGCUAUGcACCcgAGCCu-GGCCCu- -3'
miRNA:   3'- -ACCGGUAC-UGGuaUCGGuuCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 138866 0.73 0.459522
Target:  5'- gGGUCAUGACCugGGCCAgcgccucgucccgAGGCCCc- -3'
miRNA:   3'- aCCGGUACUGGuaUCGGU-------------UCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 147980 0.75 0.381406
Target:  5'- aUGGUCGUGugCAUGGCCcucguGGGGCCUu- -3'
miRNA:   3'- -ACCGGUACugGUAUCGG-----UUCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 67207 0.75 0.357143
Target:  5'- cUGGCCGUGGCCGgucgccUGGCCGgccAGGCaCAGg -3'
miRNA:   3'- -ACCGGUACUGGU------AUCGGU---UCCGgGUC- -5'
28826 5' -57.1 NC_006146.1 + 70836 0.71 0.59787
Target:  5'- gGGCCAagGGCCA-AGC--GGGCCCGGu -3'
miRNA:   3'- aCCGGUa-CUGGUaUCGguUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 160080 0.71 0.587688
Target:  5'- aGGCaccuGUGGCCcguGUAGCCGGuGCCCAGc -3'
miRNA:   3'- aCCGg---UACUGG---UAUCGGUUcCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 108069 0.71 0.577539
Target:  5'- cGGCC-UGGCCAcggcGGCCAGGGuUCCAu -3'
miRNA:   3'- aCCGGuACUGGUa---UCGGUUCC-GGGUc -5'
28826 5' -57.1 NC_006146.1 + 155864 0.71 0.567429
Target:  5'- aGGCCcggcgGGCCcUGGCCAGGcGCCCc- -3'
miRNA:   3'- aCCGGua---CUGGuAUCGGUUC-CGGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.