miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28827 3' -53.5 NC_006146.1 + 167844 0.68 0.936844
Target:  5'- --gCCUGGGcca-ACGCGCuCUCGGCGu -3'
miRNA:   3'- cgaGGACCCuaugUGCGUG-GAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 63003 0.68 0.931844
Target:  5'- gGCUCC-GGGAgucugGCGgGUGCC-CGACGu -3'
miRNA:   3'- -CGAGGaCCCUa----UGUgCGUGGaGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 113617 0.68 0.92112
Target:  5'- cCUCCUGGGggAC-CGuCAgCUUGACGg -3'
miRNA:   3'- cGAGGACCCuaUGuGC-GUgGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 9771 0.68 0.92112
Target:  5'- -aUCCUGG--UGCAUGCGCC-CAAUGa -3'
miRNA:   3'- cgAGGACCcuAUGUGCGUGGaGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 100667 0.7 0.883217
Target:  5'- --aCCUGGGGUACcccUGCuACUUCAACGc -3'
miRNA:   3'- cgaGGACCCUAUGu--GCG-UGGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 151110 0.7 0.87609
Target:  5'- aGCUCCgagGGGA-ACuCGUagACCUCAACc -3'
miRNA:   3'- -CGAGGa--CCCUaUGuGCG--UGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 71528 0.7 0.87609
Target:  5'- cGCUCCUGGGccucaACGCGCgGCCcgGGCGc -3'
miRNA:   3'- -CGAGGACCCua---UGUGCG-UGGagUUGC- -5'
28827 3' -53.5 NC_006146.1 + 108721 0.7 0.87609
Target:  5'- gGCUCCgUGGGcGUGCugGUguccGCCUCcuCGg -3'
miRNA:   3'- -CGAGG-ACCC-UAUGugCG----UGGAGuuGC- -5'
28827 3' -53.5 NC_006146.1 + 46390 0.7 0.868744
Target:  5'- uGCUgUgugagagGGGGUugGCuaGCCUCAGCGa -3'
miRNA:   3'- -CGAgGa------CCCUAugUGcgUGGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 134721 0.7 0.853412
Target:  5'- -gUCCUGcaGGAUGCAUGCACCaggcCAGCc -3'
miRNA:   3'- cgAGGAC--CCUAUGUGCGUGGa---GUUGc -5'
28827 3' -53.5 NC_006146.1 + 82072 0.71 0.828913
Target:  5'- --aCCUGGGAUACAgGgaGCCUCAGg- -3'
miRNA:   3'- cgaGGACCCUAUGUgCg-UGGAGUUgc -5'
28827 3' -53.5 NC_006146.1 + 99208 0.71 0.820375
Target:  5'- cCUCCaGGGAgGC-CGCGgCCUCGGCGc -3'
miRNA:   3'- cGAGGaCCCUaUGuGCGU-GGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 129916 0.71 0.820375
Target:  5'- cGC-CCUGGGGcgccgGCGCgGCACCaCGGCGg -3'
miRNA:   3'- -CGaGGACCCUa----UGUG-CGUGGaGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 156610 0.72 0.753353
Target:  5'- aGCUCCaGGGAcagggcgcUGCACGCgcggucauucugucGCCUCAaACGg -3'
miRNA:   3'- -CGAGGaCCCU--------AUGUGCG--------------UGGAGU-UGC- -5'
28827 3' -53.5 NC_006146.1 + 76524 0.74 0.696844
Target:  5'- gGCUCCagaaGAacUACGCGCGCCUCGGCa -3'
miRNA:   3'- -CGAGGacc-CU--AUGUGCGUGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 63129 0.74 0.685681
Target:  5'- uGCcCCUGGGAccUGCugGCcaucuccGCCUCGACc -3'
miRNA:   3'- -CGaGGACCCU--AUGugCG-------UGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 111949 0.74 0.676506
Target:  5'- cCUCgaGGGcUGCA-GCACCUCAGCGc -3'
miRNA:   3'- cGAGgaCCCuAUGUgCGUGGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 15572 0.74 0.666278
Target:  5'- gGUcCCUGGGAggACAgGCGCgUCGGCGa -3'
miRNA:   3'- -CGaGGACCCUa-UGUgCGUGgAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 89205 0.75 0.62517
Target:  5'- gGCUCCUGGGGUuUugGUuCCUCAuCGu -3'
miRNA:   3'- -CGAGGACCCUAuGugCGuGGAGUuGC- -5'
28827 3' -53.5 NC_006146.1 + 43405 0.77 0.513926
Target:  5'- aGCUgCUUGGGAaACACGCGCCgcugCAugGc -3'
miRNA:   3'- -CGA-GGACCCUaUGUGCGUGGa---GUugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.