miRNA display CGI


Results 21 - 40 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28827 5' -63.3 NC_006146.1 + 33965 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 33873 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 33780 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 33687 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 33594 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 33501 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 33408 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 34523 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 34616 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 35731 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 35638 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 35545 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 35452 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 35359 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 35266 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 35173 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 35080 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 34987 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 34802 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 34709 0.66 0.607111
Target:  5'- gGCCcCCGGccccgagcuccaGGAccGGGCAGCGGaCCCGGc -3'
miRNA:   3'- -CGGaGGCC------------CCU--CCUGUCGUCgGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.