miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28828 3' -53.6 NC_006146.1 + 156588 0.66 0.976047
Target:  5'- cUACUuuuaggGGCUCCugGGggGAACUGgGCa- -3'
miRNA:   3'- -GUGGa-----CCGAGG--UCuuCUUGAUgCGcg -5'
28828 3' -53.6 NC_006146.1 + 99308 0.66 0.976047
Target:  5'- cCGCCUGGUcagggCCAGAccuGCUGCGgaaGCc -3'
miRNA:   3'- -GUGGACCGa----GGUCUucuUGAUGCg--CG- -5'
28828 3' -53.6 NC_006146.1 + 53188 0.66 0.976047
Target:  5'- gGCCUcGGCcCCGGccuugGGGGGCgGCGUGCc -3'
miRNA:   3'- gUGGA-CCGaGGUC-----UUCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 147771 0.66 0.976047
Target:  5'- aGCCcaGGCUCCcggccucucccaGGAAGAGCaGCG-GCa -3'
miRNA:   3'- gUGGa-CCGAGG------------UCUUCUUGaUGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 102814 0.66 0.976047
Target:  5'- cCACCUGGaucgCgCGGggGcuCUGCGCuuGCu -3'
miRNA:   3'- -GUGGACCga--G-GUCuuCuuGAUGCG--CG- -5'
28828 3' -53.6 NC_006146.1 + 112848 0.66 0.976047
Target:  5'- gGCCgacaGGUagCCGGcGGAGaCUAUGCGCu -3'
miRNA:   3'- gUGGa---CCGa-GGUCuUCUU-GAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 144276 0.66 0.976047
Target:  5'- cUACUuuuaggGGCUCCugGGggGAACUGgGCa- -3'
miRNA:   3'- -GUGGa-----CCGAGG--UCuuCUUGAUgCGcg -5'
28828 3' -53.6 NC_006146.1 + 153510 0.66 0.976047
Target:  5'- cUACUuuuaggGGCUCCugGGggGAACUGgGCa- -3'
miRNA:   3'- -GUGGa-----CCGAGG--UCuuCUUGAUgCGcg -5'
28828 3' -53.6 NC_006146.1 + 147354 0.66 0.976047
Target:  5'- cUACUuuuaggGGCUCCugGGggGAACUGgGCa- -3'
miRNA:   3'- -GUGGa-----CCGAGG--UCuuCUUGAUgCGcg -5'
28828 3' -53.6 NC_006146.1 + 150432 0.66 0.976047
Target:  5'- cUACUuuuaggGGCUCCugGGggGAACUGgGCa- -3'
miRNA:   3'- -GUGGa-----CCGAGG--UCuuCUUGAUgCGcg -5'
28828 3' -53.6 NC_006146.1 + 151654 0.66 0.97554
Target:  5'- cCGCCUGGCgacCCuggggucugucuGggGGACUGagggcgGCGCc -3'
miRNA:   3'- -GUGGACCGa--GGu-----------CuuCUUGAUg-----CGCG- -5'
28828 3' -53.6 NC_006146.1 + 122244 0.66 0.973434
Target:  5'- aGCCUGGCUCU-GGAGAAgUACu--- -3'
miRNA:   3'- gUGGACCGAGGuCUUCUUgAUGcgcg -5'
28828 3' -53.6 NC_006146.1 + 33552 0.66 0.973434
Target:  5'- uGCCUGGCccuggugcuccUCCGGggGu-CgcCGCGUu -3'
miRNA:   3'- gUGGACCG-----------AGGUCuuCuuGauGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 137832 0.66 0.973434
Target:  5'- gCACCUGGaaggCAGggGGGCUcgggguggguggGCGUGUc -3'
miRNA:   3'- -GUGGACCgag-GUCuuCUUGA------------UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 103436 0.66 0.973434
Target:  5'- gACCggGGCUUCGcGGAGcAC-AUGCGCa -3'
miRNA:   3'- gUGGa-CCGAGGU-CUUCuUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 114464 0.66 0.973434
Target:  5'- gAUCUGGC-CCAGcAGGuGCUgguGCGCGa -3'
miRNA:   3'- gUGGACCGaGGUC-UUCuUGA---UGCGCg -5'
28828 3' -53.6 NC_006146.1 + 146155 0.66 0.973162
Target:  5'- gCGCCUGGCucaugugUCCAGAccGGGACUcUGgGa -3'
miRNA:   3'- -GUGGACCG-------AGGUCU--UCUUGAuGCgCg -5'
28828 3' -53.6 NC_006146.1 + 143077 0.66 0.973162
Target:  5'- gCGCCUGGCucaugugUCCAGAccGGGACUcUGgGa -3'
miRNA:   3'- -GUGGACCG-------AGGUCU--UCUUGAuGCgCg -5'
28828 3' -53.6 NC_006146.1 + 152311 0.66 0.973162
Target:  5'- gCGCCUGGCucaugugUCCAGAccGGGACUcUGgGa -3'
miRNA:   3'- -GUGGACCG-------AGGUCU--UCUUGAuGCgCg -5'
28828 3' -53.6 NC_006146.1 + 155389 0.66 0.973162
Target:  5'- gCGCCUGGCucaugugUCCAGAccGGGACUcUGgGa -3'
miRNA:   3'- -GUGGACCG-------AGGUCU--UCUUGAuGCgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.