Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28828 | 3' | -53.6 | NC_006146.1 | + | 76518 | 1.13 | 0.002938 |
Target: 5'- aCACCUGGCUCCAGAAGAACUACGCGCg -3' miRNA: 3'- -GUGGACCGAGGUCUUCUUGAUGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 62508 | 0.84 | 0.205733 |
Target: 5'- gCACCUGGC-CCuGggGGGCUGCGUGUu -3' miRNA: 3'- -GUGGACCGaGGuCuuCUUGAUGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 45559 | 0.8 | 0.325034 |
Target: 5'- -cCCUGGcCUCCGcGAGGAGCU-CGCGCa -3' miRNA: 3'- guGGACC-GAGGU-CUUCUUGAuGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 101663 | 0.75 | 0.609467 |
Target: 5'- gACCUGGCcCUGGggGGaaacggGCUACGgGCg -3' miRNA: 3'- gUGGACCGaGGUCuuCU------UGAUGCgCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 115250 | 0.75 | 0.572449 |
Target: 5'- cCGCCUGGCUCCGGcugcugcaccccucgGGGGcccucuucuacgACUACGUGUa -3' miRNA: 3'- -GUGGACCGAGGUC---------------UUCU------------UGAUGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 167195 | 0.74 | 0.640499 |
Target: 5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3' miRNA: 3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 48224 | 0.74 | 0.640499 |
Target: 5'- gGCCUGGCgcgCCuGGGuGAGCgcCGCGCg -3' miRNA: 3'- gUGGACCGa--GGuCUU-CUUGauGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 66041 | 0.74 | 0.650841 |
Target: 5'- aUACgUGaaGCUgCCGGAGGAGCUgACGCGCu -3' miRNA: 3'- -GUGgAC--CGA-GGUCUUCUUGA-UGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 169991 | 0.74 | 0.640499 |
Target: 5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3' miRNA: 3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 168621 | 0.74 | 0.660136 |
Target: 5'- gGCCUGGCUCCGGu-GAccucaaagccaaACUgucggccaagcccACGCGCa -3' miRNA: 3'- gUGGACCGAGGUCuuCU------------UGA-------------UGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 168127 | 0.74 | 0.640499 |
Target: 5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3' miRNA: 3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 169059 | 0.74 | 0.640499 |
Target: 5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3' miRNA: 3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 54036 | 0.73 | 0.72331 |
Target: 5'- gCGCCUGGCcgggCCGGAugugguggaggacgAGAGCgugggucaguacguuUGCGCGCu -3' miRNA: 3'- -GUGGACCGa---GGUCU--------------UCUUG---------------AUGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 122034 | 0.72 | 0.751937 |
Target: 5'- gGCCUGGCgCCuGGAGGccgacgGCUuCGCGCc -3' miRNA: 3'- gUGGACCGaGGuCUUCU------UGAuGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 141201 | 0.72 | 0.751937 |
Target: 5'- aUACCaggGGCUCCugGGggGAACUGgGCa- -3' miRNA: 3'- -GUGGa--CCGAGG--UCuuCUUGAUgCGcg -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 44967 | 0.72 | 0.76161 |
Target: 5'- -uCCUGGCUCCGcAAGAcCU-CGUGCg -3' miRNA: 3'- guGGACCGAGGUcUUCUuGAuGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 156605 | 0.71 | 0.816858 |
Target: 5'- gCGCCa-GCUCCAGGgacAGGGCgcugcACGCGCg -3' miRNA: 3'- -GUGGacCGAGGUCU---UCUUGa----UGCGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 127667 | 0.71 | 0.825517 |
Target: 5'- cUAUCUGcuGCUCCAGggGGGCUccucucaccaGCaGCGCc -3' miRNA: 3'- -GUGGAC--CGAGGUCuuCUUGA----------UG-CGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 136759 | 0.71 | 0.808028 |
Target: 5'- uCGCCggGGCUCCGGGAGGcCcgGC-CGCg -3' miRNA: 3'- -GUGGa-CCGAGGUCUUCUuGa-UGcGCG- -5' |
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28828 | 3' | -53.6 | NC_006146.1 | + | 55752 | 0.7 | 0.833995 |
Target: 5'- uGCCgGGCguuuuUCaacaaGGAGGAGCUGCuGCGCa -3' miRNA: 3'- gUGGaCCG-----AGg----UCUUCUUGAUG-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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