miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28828 3' -53.6 NC_006146.1 + 76518 1.13 0.002938
Target:  5'- aCACCUGGCUCCAGAAGAACUACGCGCg -3'
miRNA:   3'- -GUGGACCGAGGUCUUCUUGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 62508 0.84 0.205733
Target:  5'- gCACCUGGC-CCuGggGGGCUGCGUGUu -3'
miRNA:   3'- -GUGGACCGaGGuCuuCUUGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 45559 0.8 0.325034
Target:  5'- -cCCUGGcCUCCGcGAGGAGCU-CGCGCa -3'
miRNA:   3'- guGGACC-GAGGU-CUUCUUGAuGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 115250 0.75 0.572449
Target:  5'- cCGCCUGGCUCCGGcugcugcaccccucgGGGGcccucuucuacgACUACGUGUa -3'
miRNA:   3'- -GUGGACCGAGGUC---------------UUCU------------UGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 101663 0.75 0.609467
Target:  5'- gACCUGGCcCUGGggGGaaacggGCUACGgGCg -3'
miRNA:   3'- gUGGACCGaGGUCuuCU------UGAUGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 168127 0.74 0.640499
Target:  5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3'
miRNA:   3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 169059 0.74 0.640499
Target:  5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3'
miRNA:   3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 167195 0.74 0.640499
Target:  5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3'
miRNA:   3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 48224 0.74 0.640499
Target:  5'- gGCCUGGCgcgCCuGGGuGAGCgcCGCGCg -3'
miRNA:   3'- gUGGACCGa--GGuCUU-CUUGauGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 169991 0.74 0.640499
Target:  5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3'
miRNA:   3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 66041 0.74 0.650841
Target:  5'- aUACgUGaaGCUgCCGGAGGAGCUgACGCGCu -3'
miRNA:   3'- -GUGgAC--CGA-GGUCUUCUUGA-UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 168621 0.74 0.660136
Target:  5'- gGCCUGGCUCCGGu-GAccucaaagccaaACUgucggccaagcccACGCGCa -3'
miRNA:   3'- gUGGACCGAGGUCuuCU------------UGA-------------UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 54036 0.73 0.72331
Target:  5'- gCGCCUGGCcgggCCGGAugugguggaggacgAGAGCgugggucaguacguuUGCGCGCu -3'
miRNA:   3'- -GUGGACCGa---GGUCU--------------UCUUG---------------AUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 122034 0.72 0.751937
Target:  5'- gGCCUGGCgCCuGGAGGccgacgGCUuCGCGCc -3'
miRNA:   3'- gUGGACCGaGGuCUUCU------UGAuGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 141201 0.72 0.751937
Target:  5'- aUACCaggGGCUCCugGGggGAACUGgGCa- -3'
miRNA:   3'- -GUGGa--CCGAGG--UCuuCUUGAUgCGcg -5'
28828 3' -53.6 NC_006146.1 + 44967 0.72 0.76161
Target:  5'- -uCCUGGCUCCGcAAGAcCU-CGUGCg -3'
miRNA:   3'- guGGACCGAGGUcUUCUuGAuGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 136759 0.71 0.808028
Target:  5'- uCGCCggGGCUCCGGGAGGcCcgGC-CGCg -3'
miRNA:   3'- -GUGGa-CCGAGGUCUUCUuGa-UGcGCG- -5'
28828 3' -53.6 NC_006146.1 + 156605 0.71 0.816858
Target:  5'- gCGCCa-GCUCCAGGgacAGGGCgcugcACGCGCg -3'
miRNA:   3'- -GUGGacCGAGGUCU---UCUUGa----UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 127667 0.71 0.825517
Target:  5'- cUAUCUGcuGCUCCAGggGGGCUccucucaccaGCaGCGCc -3'
miRNA:   3'- -GUGGAC--CGAGGUCuuCUUGA----------UG-CGCG- -5'
28828 3' -53.6 NC_006146.1 + 55752 0.7 0.833995
Target:  5'- uGCCgGGCguuuuUCaacaaGGAGGAGCUGCuGCGCa -3'
miRNA:   3'- gUGGaCCG-----AGg----UCUUCUUGAUG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.