miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28828 3' -53.6 NC_006146.1 + 55752 0.7 0.833995
Target:  5'- uGCCgGGCguuuuUCaacaaGGAGGAGCUGCuGCGCa -3'
miRNA:   3'- gUGGaCCG-----AGg----UCUUCUUGAUG-CGCG- -5'
28828 3' -53.6 NC_006146.1 + 137914 0.7 0.842286
Target:  5'- gGCCgggGGUUCCGGggGcAGCcgcgacccaGCGCGCc -3'
miRNA:   3'- gUGGa--CCGAGGUCuuC-UUGa--------UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 11358 0.7 0.842286
Target:  5'- gGCCUGGCg-CAGGc--GCUGCGCGUc -3'
miRNA:   3'- gUGGACCGagGUCUucuUGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 62996 0.7 0.86596
Target:  5'- gGCCcugGGCUCCGGGAGucugGCGgGUg -3'
miRNA:   3'- gUGGa--CCGAGGUCUUCuugaUGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 43058 0.69 0.879246
Target:  5'- cCGCCUGGCgguugaggggugCCAGc--GACUgGCGCGCu -3'
miRNA:   3'- -GUGGACCGa-----------GGUCuucUUGA-UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 21502 0.69 0.880678
Target:  5'- uCACCUGGCcgucuaCCAGAAGuuCgucgaGCGCa -3'
miRNA:   3'- -GUGGACCGa-----GGUCUUCuuGaug--CGCG- -5'
28828 3' -53.6 NC_006146.1 + 128182 0.69 0.880678
Target:  5'- aCGCCgggaGGCggcCCAGggGGGCgcCGCGg -3'
miRNA:   3'- -GUGGa---CCGa--GGUCuuCUUGauGCGCg -5'
28828 3' -53.6 NC_006146.1 + 25301 0.69 0.887701
Target:  5'- cCugCUGGCgcagcacacgacUCCGuuccuGAAGucCUACGCGCg -3'
miRNA:   3'- -GugGACCG------------AGGU-----CUUCuuGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 40657 0.69 0.887701
Target:  5'- gGCCcGGUUCCuGGAGAcuggugguggGCUcugagGCGCGCu -3'
miRNA:   3'- gUGGaCCGAGGuCUUCU----------UGA-----UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 71451 0.69 0.894492
Target:  5'- gCACCUGGCgCC-GAGGAGCga-GgGCc -3'
miRNA:   3'- -GUGGACCGaGGuCUUCUUGaugCgCG- -5'
28828 3' -53.6 NC_006146.1 + 66101 0.69 0.894492
Target:  5'- uCugUUGGg-CCGGggGAGCUACGgGg -3'
miRNA:   3'- -GugGACCgaGGUCuuCUUGAUGCgCg -5'
28828 3' -53.6 NC_006146.1 + 136719 0.69 0.894492
Target:  5'- uGCCUGGC-CCAGGGuccGGCUGgGgGCg -3'
miRNA:   3'- gUGGACCGaGGUCUUc--UUGAUgCgCG- -5'
28828 3' -53.6 NC_006146.1 + 157830 0.69 0.90105
Target:  5'- cCGCgCUGGCcCCGGAGGGG--ACGgGCa -3'
miRNA:   3'- -GUG-GACCGaGGUCUUCUUgaUGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 61494 0.68 0.913449
Target:  5'- uCACCagGGCUCCgAGGAGGcccCUGC-CGCc -3'
miRNA:   3'- -GUGGa-CCGAGG-UCUUCUu--GAUGcGCG- -5'
28828 3' -53.6 NC_006146.1 + 146973 0.68 0.913449
Target:  5'- cCGCCcuuggGGCa--GGAGGGGCUGgGCGCa -3'
miRNA:   3'- -GUGGa----CCGaggUCUUCUUGAUgCGCG- -5'
28828 3' -53.6 NC_006146.1 + 156354 0.68 0.913449
Target:  5'- -uCCUGGgUCCAGGGccgccAUUAUGCGCa -3'
miRNA:   3'- guGGACCgAGGUCUUcu---UGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 147120 0.68 0.913449
Target:  5'- -uCCUGGgUCCAGGGccgccAUUAUGCGCa -3'
miRNA:   3'- guGGACCgAGGUCUUcu---UGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 153276 0.68 0.913449
Target:  5'- -uCCUGGgUCCAGGGccgccAUUAUGCGCa -3'
miRNA:   3'- guGGACCgAGGUCUUcu---UGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 150198 0.68 0.913449
Target:  5'- -uCCUGGgUCCAGGGccgccAUUAUGCGCa -3'
miRNA:   3'- guGGACCgAGGUCUUcu---UGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 144042 0.68 0.913449
Target:  5'- -uCCUGGgUCCAGGGccgccAUUAUGCGCa -3'
miRNA:   3'- guGGACCgAGGUCUUcu---UGAUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.