miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28828 3' -53.6 NC_006146.1 + 149233 0.66 0.973162
Target:  5'- gCGCCUGGCucaugugUCCAGAccGGGACUcUGgGa -3'
miRNA:   3'- -GUGGACCG-------AGGUCU--UCUUGAuGCgCg -5'
28828 3' -53.6 NC_006146.1 + 146155 0.66 0.973162
Target:  5'- gCGCCUGGCucaugugUCCAGAccGGGACUcUGgGa -3'
miRNA:   3'- -GUGGACCG-------AGGUCU--UCUUGAuGCgCg -5'
28828 3' -53.6 NC_006146.1 + 72532 0.66 0.970621
Target:  5'- nCugC-GGCUCUcGggGAGCcACGUGUg -3'
miRNA:   3'- -GugGaCCGAGGuCuuCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 163194 0.66 0.970621
Target:  5'- gGCUUGGCUucugccccUCAGAGGAGC--CGgGCa -3'
miRNA:   3'- gUGGACCGA--------GGUCUUCUUGauGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 48629 0.66 0.970621
Target:  5'- uGCCgugggggcgGGCUCCGGgcGggUgcccaGCGCc -3'
miRNA:   3'- gUGGa--------CCGAGGUCuuCuuGaug--CGCG- -5'
28828 3' -53.6 NC_006146.1 + 106851 0.66 0.970621
Target:  5'- aGCCUGGCuggcuuUCUGGggGGACagUACaaGCa -3'
miRNA:   3'- gUGGACCG------AGGUCuuCUUG--AUGcgCG- -5'
28828 3' -53.6 NC_006146.1 + 114120 0.66 0.970621
Target:  5'- cCGCC-GcGCUCaccgAGGAGGcCUGCGCGUg -3'
miRNA:   3'- -GUGGaC-CGAGg---UCUUCUuGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 146853 0.66 0.968835
Target:  5'- gGCCUGGCUCgGGGccgcgucaccccgccAGGGggACGaCGCc -3'
miRNA:   3'- gUGGACCGAGgUCU---------------UCUUgaUGC-GCG- -5'
28828 3' -53.6 NC_006146.1 + 71788 0.66 0.967601
Target:  5'- aCGCCUGaggCCGGAGGGcaggcGCgggACGUGCg -3'
miRNA:   3'- -GUGGACcgaGGUCUUCU-----UGa--UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 150246 0.66 0.967601
Target:  5'- --aCUGGC-CaGGAAGGACU-CGUGCa -3'
miRNA:   3'- gugGACCGaGgUCUUCUUGAuGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 88179 0.66 0.967288
Target:  5'- aCAUCUGGC-CCGGGAGGugucucaGCUAUugaGCGa -3'
miRNA:   3'- -GUGGACCGaGGUCUUCU-------UGAUG---CGCg -5'
28828 3' -53.6 NC_006146.1 + 23359 0.66 0.966654
Target:  5'- gCGCCUGGCgcguggaaauagggUCUAGggG-ACUG-GCGUu -3'
miRNA:   3'- -GUGGACCG--------------AGGUCuuCuUGAUgCGCG- -5'
28828 3' -53.6 NC_006146.1 + 92158 0.66 0.964367
Target:  5'- aGCCUGGCUCaCAcGcuGAcauugGCUGgGCGUg -3'
miRNA:   3'- gUGGACCGAG-GU-CuuCU-----UGAUgCGCG- -5'
28828 3' -53.6 NC_006146.1 + 8430 0.66 0.964367
Target:  5'- gACCcugGGgaCCAGGAGAGCUcGgGgGCg -3'
miRNA:   3'- gUGGa--CCgaGGUCUUCUUGA-UgCgCG- -5'
28828 3' -53.6 NC_006146.1 + 127175 0.66 0.962322
Target:  5'- cCACCUGGC-CCGGGcggaggaaauccgccAGGACcuggACGcCGUa -3'
miRNA:   3'- -GUGGACCGaGGUCU---------------UCUUGa---UGC-GCG- -5'
28828 3' -53.6 NC_006146.1 + 117180 0.66 0.960914
Target:  5'- aGCCgcGGCUcCCGGAgAGGACggggaACGUGCc -3'
miRNA:   3'- gUGGa-CCGA-GGUCU-UCUUGa----UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 42661 0.66 0.960914
Target:  5'- gGCCcagaGGUagCGGAAGAGCUcccCGCGCc -3'
miRNA:   3'- gUGGa---CCGagGUCUUCUUGAu--GCGCG- -5'
28828 3' -53.6 NC_006146.1 + 14538 0.66 0.960914
Target:  5'- aGCCUGGa-CCGGGcccuGGAGCUGCuGgGCc -3'
miRNA:   3'- gUGGACCgaGGUCU----UCUUGAUG-CgCG- -5'
28828 3' -53.6 NC_006146.1 + 14199 0.66 0.960914
Target:  5'- aGCCUGGa-CgGGGAG-GCggugGCGCGCa -3'
miRNA:   3'- gUGGACCgaGgUCUUCuUGa---UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 142560 0.66 0.960914
Target:  5'- aGCCUaGGCUa-GGcGGAGcCUGCGUGCg -3'
miRNA:   3'- gUGGA-CCGAggUCuUCUU-GAUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.