miRNA display CGI


Results 41 - 60 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28828 3' -53.6 NC_006146.1 + 43187 0.66 0.960197
Target:  5'- cUACCUGGCcuuucugacggcCCAGuccugcuacGAGGAgUACGUGCa -3'
miRNA:   3'- -GUGGACCGa-----------GGUC---------UUCUUgAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 44785 0.67 0.957236
Target:  5'- uGCCgGGCU-CAGggGGGCgcaGCGUc -3'
miRNA:   3'- gUGGaCCGAgGUCuuCUUGaugCGCG- -5'
28828 3' -53.6 NC_006146.1 + 42937 0.67 0.957236
Target:  5'- gCGCCaaGCUCCGGAGG-ACUccCGCGa -3'
miRNA:   3'- -GUGGacCGAGGUCUUCuUGAu-GCGCg -5'
28828 3' -53.6 NC_006146.1 + 109581 0.67 0.956856
Target:  5'- uCGCC-GGCUaggccacCCGGGcAGGACgccGCGCGCc -3'
miRNA:   3'- -GUGGaCCGA-------GGUCU-UCUUGa--UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 39695 0.67 0.955701
Target:  5'- gGCCUGcagcgccGCUCCGGAGGcagaggccugcaccAGCUucuucuCGCGCu -3'
miRNA:   3'- gUGGAC-------CGAGGUCUUC--------------UUGAu-----GCGCG- -5'
28828 3' -53.6 NC_006146.1 + 42134 0.67 0.95492
Target:  5'- cCugCUGGCcacacUCCAGAAGAAggccucggacaccccCUGCGgGa -3'
miRNA:   3'- -GugGACCG-----AGGUCUUCUU---------------GAUGCgCg -5'
28828 3' -53.6 NC_006146.1 + 8504 0.67 0.953329
Target:  5'- cCAuCCUGGCccaCCGGGGucccGGGCgcggGCGCGCc -3'
miRNA:   3'- -GU-GGACCGa--GGUCUU----CUUGa---UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 72499 0.67 0.953329
Target:  5'- uGCCUGGCUgCagcgccugcGGAGGAGCggACG-GCu -3'
miRNA:   3'- gUGGACCGAgG---------UCUUCUUGa-UGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 151583 0.67 0.953329
Target:  5'- gGCCUGGUUgccguagcCCAuGAuGGAGCgGCGCGUg -3'
miRNA:   3'- gUGGACCGA--------GGU-CU-UCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 124017 0.67 0.949188
Target:  5'- cCGCUUGuagguGC-CCAGGAGAaaAUUGCGCGUc -3'
miRNA:   3'- -GUGGAC-----CGaGGUCUUCU--UGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 76920 0.67 0.949188
Target:  5'- gACCgcggGGCUgcagCCGGguGAACUGC-CGCu -3'
miRNA:   3'- gUGGa---CCGA----GGUCuuCUUGAUGcGCG- -5'
28828 3' -53.6 NC_006146.1 + 51926 0.67 0.949188
Target:  5'- gCACCgacgGGCggccCCGGugcGGuCUGCGCGCc -3'
miRNA:   3'- -GUGGa---CCGa---GGUCuu-CUuGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 53119 0.67 0.949188
Target:  5'- gGCCcGGC-CCGGggGAGCgcgACGguUGCc -3'
miRNA:   3'- gUGGaCCGaGGUCuuCUUGa--UGC--GCG- -5'
28828 3' -53.6 NC_006146.1 + 70151 0.67 0.949188
Target:  5'- uCGCCUGGCUCCuggccGggGcGCUG-GUGg -3'
miRNA:   3'- -GUGGACCGAGGu----CuuCuUGAUgCGCg -5'
28828 3' -53.6 NC_006146.1 + 53507 0.67 0.944809
Target:  5'- -gUCUGGCUCUGGcugcGGGCcGCGCGUg -3'
miRNA:   3'- guGGACCGAGGUCuu--CUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 20586 0.67 0.944809
Target:  5'- gGCCUGcGC-CCGGGcgAGGACUACGaGUc -3'
miRNA:   3'- gUGGAC-CGaGGUCU--UCUUGAUGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 130488 0.67 0.943905
Target:  5'- cCGCCccgggUGGCUacuuugcccccgCGGGAGGcuACUACGCGCc -3'
miRNA:   3'- -GUGG-----ACCGAg-----------GUCUUCU--UGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 132094 0.67 0.940191
Target:  5'- gGCCUGGCUgCAGAugugcaccccgcAGGACUuccACaaGCa -3'
miRNA:   3'- gUGGACCGAgGUCU------------UCUUGA---UGcgCG- -5'
28828 3' -53.6 NC_006146.1 + 14123 0.67 0.940191
Target:  5'- gCugCUGGCggcggccuaCAGccAGGugUACGCGCu -3'
miRNA:   3'- -GugGACCGag-------GUCu-UCUugAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 158215 0.67 0.940191
Target:  5'- gGCCaGGCUCCuGAAG---UugGUGCa -3'
miRNA:   3'- gUGGaCCGAGGuCUUCuugAugCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.