miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28828 3' -53.6 NC_006146.1 + 565 0.68 0.924878
Target:  5'- aCACgUGGcCUCCcaggAGAGGGGCcggGgGCGCg -3'
miRNA:   3'- -GUGgACC-GAGG----UCUUCUUGa--UgCGCG- -5'
28828 3' -53.6 NC_006146.1 + 1496 0.68 0.924878
Target:  5'- aCACgUGGcCUCCcaggAGAGGGGCcggGgGCGCg -3'
miRNA:   3'- -GUGgACC-GAGG----UCUUCUUGa--UgCGCG- -5'
28828 3' -53.6 NC_006146.1 + 2428 0.68 0.924878
Target:  5'- aCACgUGGcCUCCcaggAGAGGGGCcggGgGCGCg -3'
miRNA:   3'- -GUGgACC-GAGG----UCUUCUUGa--UgCGCG- -5'
28828 3' -53.6 NC_006146.1 + 3360 0.68 0.924878
Target:  5'- aCACgUGGcCUCCcaggAGAGGGGCcggGgGCGCg -3'
miRNA:   3'- -GUGgACC-GAGG----UCUUCUUGa--UgCGCG- -5'
28828 3' -53.6 NC_006146.1 + 8430 0.66 0.964367
Target:  5'- gACCcugGGgaCCAGGAGAGCUcGgGgGCg -3'
miRNA:   3'- gUGGa--CCgaGGUCUUCUUGA-UgCgCG- -5'
28828 3' -53.6 NC_006146.1 + 8504 0.67 0.953329
Target:  5'- cCAuCCUGGCccaCCGGGGucccGGGCgcggGCGCGCc -3'
miRNA:   3'- -GU-GGACCGa--GGUCUU----CUUGa---UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 11358 0.7 0.842286
Target:  5'- gGCCUGGCg-CAGGc--GCUGCGCGUc -3'
miRNA:   3'- gUGGACCGagGUCUucuUGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 14123 0.67 0.940191
Target:  5'- gCugCUGGCggcggccuaCAGccAGGugUACGCGCu -3'
miRNA:   3'- -GugGACCGag-------GUCu-UCUugAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 14199 0.66 0.960914
Target:  5'- aGCCUGGa-CgGGGAG-GCggugGCGCGCa -3'
miRNA:   3'- gUGGACCgaGgUCUUCuUGa---UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 14538 0.66 0.960914
Target:  5'- aGCCUGGa-CCGGGcccuGGAGCUGCuGgGCc -3'
miRNA:   3'- gUGGACCgaGGUCU----UCUUGAUG-CgCG- -5'
28828 3' -53.6 NC_006146.1 + 20586 0.67 0.944809
Target:  5'- gGCCUGcGC-CCGGGcgAGGACUACGaGUc -3'
miRNA:   3'- gUGGAC-CGaGGUCU--UCUUGAUGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 21502 0.69 0.880678
Target:  5'- uCACCUGGCcgucuaCCAGAAGuuCgucgaGCGCa -3'
miRNA:   3'- -GUGGACCGa-----GGUCUUCuuGaug--CGCG- -5'
28828 3' -53.6 NC_006146.1 + 23359 0.66 0.966654
Target:  5'- gCGCCUGGCgcguggaaauagggUCUAGggG-ACUG-GCGUu -3'
miRNA:   3'- -GUGGACCG--------------AGGUCuuCuUGAUgCGCG- -5'
28828 3' -53.6 NC_006146.1 + 25301 0.69 0.887701
Target:  5'- cCugCUGGCgcagcacacgacUCCGuuccuGAAGucCUACGCGCg -3'
miRNA:   3'- -GugGACCG------------AGGU-----CUUCuuGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 25837 0.68 0.924878
Target:  5'- uCAUgaGGagauacaUCCAGcgccAGGGCUGCGCGCu -3'
miRNA:   3'- -GUGgaCCg------AGGUCu---UCUUGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 32889 0.68 0.930227
Target:  5'- uGCCUGGCaCCAGGGuccGGCUGgGgGCg -3'
miRNA:   3'- gUGGACCGaGGUCUUc--UUGAUgCgCG- -5'
28828 3' -53.6 NC_006146.1 + 33552 0.66 0.973434
Target:  5'- uGCCUGGCccuggugcuccUCCGGggGu-CgcCGCGUu -3'
miRNA:   3'- gUGGACCG-----------AGGUCuuCuuGauGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 34194 0.68 0.919285
Target:  5'- -cCCUGGUgCCAGGcaGGGACcuCGCGCc -3'
miRNA:   3'- guGGACCGaGGUCU--UCUUGauGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 39695 0.67 0.955701
Target:  5'- gGCCUGcagcgccGCUCCGGAGGcagaggccugcaccAGCUucuucuCGCGCu -3'
miRNA:   3'- gUGGAC-------CGAGGUCUUC--------------UUGAu-----GCGCG- -5'
28828 3' -53.6 NC_006146.1 + 40657 0.69 0.887701
Target:  5'- gGCCcGGUUCCuGGAGAcuggugguggGCUcugagGCGCGCu -3'
miRNA:   3'- gUGGaCCGAGGuCUUCU----------UGA-----UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.