miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28828 3' -53.6 NC_006146.1 + 41123 0.68 0.935331
Target:  5'- cCACUuuagGGUcCCGGggGAGggGCGUGCg -3'
miRNA:   3'- -GUGGa---CCGaGGUCuuCUUgaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 42134 0.67 0.95492
Target:  5'- cCugCUGGCcacacUCCAGAAGAAggccucggacaccccCUGCGgGa -3'
miRNA:   3'- -GugGACCG-----AGGUCUUCUU---------------GAUGCgCg -5'
28828 3' -53.6 NC_006146.1 + 42661 0.66 0.960914
Target:  5'- gGCCcagaGGUagCGGAAGAGCUcccCGCGCc -3'
miRNA:   3'- gUGGa---CCGagGUCUUCUUGAu--GCGCG- -5'
28828 3' -53.6 NC_006146.1 + 42937 0.67 0.957236
Target:  5'- gCGCCaaGCUCCGGAGG-ACUccCGCGa -3'
miRNA:   3'- -GUGGacCGAGGUCUUCuUGAu-GCGCg -5'
28828 3' -53.6 NC_006146.1 + 43058 0.69 0.879246
Target:  5'- cCGCCUGGCgguugaggggugCCAGc--GACUgGCGCGCu -3'
miRNA:   3'- -GUGGACCGa-----------GGUCuucUUGA-UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 43187 0.66 0.960197
Target:  5'- cUACCUGGCcuuucugacggcCCAGuccugcuacGAGGAgUACGUGCa -3'
miRNA:   3'- -GUGGACCGa-----------GGUC---------UUCUUgAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 44785 0.67 0.957236
Target:  5'- uGCCgGGCU-CAGggGGGCgcaGCGUc -3'
miRNA:   3'- gUGGaCCGAgGUCuuCUUGaugCGCG- -5'
28828 3' -53.6 NC_006146.1 + 44967 0.72 0.76161
Target:  5'- -uCCUGGCUCCGcAAGAcCU-CGUGCg -3'
miRNA:   3'- guGGACCGAGGUcUUCUuGAuGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 45559 0.8 0.325034
Target:  5'- -cCCUGGcCUCCGcGAGGAGCU-CGCGCa -3'
miRNA:   3'- guGGACC-GAGGU-CUUCUUGAuGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 48224 0.74 0.640499
Target:  5'- gGCCUGGCgcgCCuGGGuGAGCgcCGCGCg -3'
miRNA:   3'- gUGGACCGa--GGuCUU-CUUGauGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 48629 0.66 0.970621
Target:  5'- uGCCgugggggcgGGCUCCGGgcGggUgcccaGCGCc -3'
miRNA:   3'- gUGGa--------CCGAGGUCuuCuuGaug--CGCG- -5'
28828 3' -53.6 NC_006146.1 + 51926 0.67 0.949188
Target:  5'- gCACCgacgGGCggccCCGGugcGGuCUGCGCGCc -3'
miRNA:   3'- -GUGGa---CCGa---GGUCuu-CUuGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 53119 0.67 0.949188
Target:  5'- gGCCcGGC-CCGGggGAGCgcgACGguUGCc -3'
miRNA:   3'- gUGGaCCGaGGUCuuCUUGa--UGC--GCG- -5'
28828 3' -53.6 NC_006146.1 + 53188 0.66 0.976047
Target:  5'- gGCCUcGGCcCCGGccuugGGGGGCgGCGUGCc -3'
miRNA:   3'- gUGGA-CCGaGGUC-----UUCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 53507 0.67 0.944809
Target:  5'- -gUCUGGCUCUGGcugcGGGCcGCGCGUg -3'
miRNA:   3'- guGGACCGAGGUCuu--CUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 54036 0.73 0.72331
Target:  5'- gCGCCUGGCcgggCCGGAugugguggaggacgAGAGCgugggucaguacguuUGCGCGCu -3'
miRNA:   3'- -GUGGACCGa---GGUCU--------------UCUUG---------------AUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 55752 0.7 0.833995
Target:  5'- uGCCgGGCguuuuUCaacaaGGAGGAGCUGCuGCGCa -3'
miRNA:   3'- gUGGaCCG-----AGg----UCUUCUUGAUG-CGCG- -5'
28828 3' -53.6 NC_006146.1 + 60142 0.68 0.923779
Target:  5'- gACCUGGUggggggugugugCCAGggGGAUUAgaagUGUGCu -3'
miRNA:   3'- gUGGACCGa-----------GGUCuuCUUGAU----GCGCG- -5'
28828 3' -53.6 NC_006146.1 + 61494 0.68 0.913449
Target:  5'- uCACCagGGCUCCgAGGAGGcccCUGC-CGCc -3'
miRNA:   3'- -GUGGa-CCGAGG-UCUUCUu--GAUGcGCG- -5'
28828 3' -53.6 NC_006146.1 + 62508 0.84 0.205733
Target:  5'- gCACCUGGC-CCuGggGGGCUGCGUGUu -3'
miRNA:   3'- -GUGGACCGaGGuCuuCUUGAUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.