miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28828 3' -53.6 NC_006146.1 + 62996 0.7 0.86596
Target:  5'- gGCCcugGGCUCCGGGAGucugGCGgGUg -3'
miRNA:   3'- gUGGa--CCGAGGUCUUCuugaUGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 63992 0.68 0.92433
Target:  5'- uCugCUGGCUuccagucCCAGAGGAucccgACUAUGC-Ca -3'
miRNA:   3'- -GugGACCGA-------GGUCUUCU-----UGAUGCGcG- -5'
28828 3' -53.6 NC_006146.1 + 66041 0.74 0.650841
Target:  5'- aUACgUGaaGCUgCCGGAGGAGCUgACGCGCu -3'
miRNA:   3'- -GUGgAC--CGA-GGUCUUCUUGA-UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 66101 0.69 0.894492
Target:  5'- uCugUUGGg-CCGGggGAGCUACGgGg -3'
miRNA:   3'- -GugGACCgaGGUCuuCUUGAUGCgCg -5'
28828 3' -53.6 NC_006146.1 + 70151 0.67 0.949188
Target:  5'- uCGCCUGGCUCCuggccGggGcGCUG-GUGg -3'
miRNA:   3'- -GUGGACCGAGGu----CuuCuUGAUgCGCg -5'
28828 3' -53.6 NC_006146.1 + 71451 0.69 0.894492
Target:  5'- gCACCUGGCgCC-GAGGAGCga-GgGCc -3'
miRNA:   3'- -GUGGACCGaGGuCUUCUUGaugCgCG- -5'
28828 3' -53.6 NC_006146.1 + 71788 0.66 0.967601
Target:  5'- aCGCCUGaggCCGGAGGGcaggcGCgggACGUGCg -3'
miRNA:   3'- -GUGGACcgaGGUCUUCU-----UGa--UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 72499 0.67 0.953329
Target:  5'- uGCCUGGCUgCagcgccugcGGAGGAGCggACG-GCu -3'
miRNA:   3'- gUGGACCGAgG---------UCUUCUUGa-UGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 72532 0.66 0.970621
Target:  5'- nCugC-GGCUCUcGggGAGCcACGUGUg -3'
miRNA:   3'- -GugGaCCGAGGuCuuCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 75660 0.68 0.934329
Target:  5'- aCGCCgcgggucagcagucaUGGCcgcucaacggacgccUCCcuGGAGGAGCUGCaGCGCa -3'
miRNA:   3'- -GUGG---------------ACCG---------------AGG--UCUUCUUGAUG-CGCG- -5'
28828 3' -53.6 NC_006146.1 + 76518 1.13 0.002938
Target:  5'- aCACCUGGCUCCAGAAGAACUACGCGCg -3'
miRNA:   3'- -GUGGACCGAGGUCUUCUUGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 76920 0.67 0.949188
Target:  5'- gACCgcggGGCUgcagCCGGguGAACUGC-CGCu -3'
miRNA:   3'- gUGGa---CCGA----GGUCuuCUUGAUGcGCG- -5'
28828 3' -53.6 NC_006146.1 + 84620 0.68 0.935331
Target:  5'- uGCC-GGa--CAGAGGAGCUACGUGa -3'
miRNA:   3'- gUGGaCCgagGUCUUCUUGAUGCGCg -5'
28828 3' -53.6 NC_006146.1 + 88179 0.66 0.967288
Target:  5'- aCAUCUGGC-CCGGGAGGugucucaGCUAUugaGCGa -3'
miRNA:   3'- -GUGGACCGaGGUCUUCU-------UGAUG---CGCg -5'
28828 3' -53.6 NC_006146.1 + 92158 0.66 0.964367
Target:  5'- aGCCUGGCUCaCAcGcuGAcauugGCUGgGCGUg -3'
miRNA:   3'- gUGGACCGAG-GU-CuuCU-----UGAUgCGCG- -5'
28828 3' -53.6 NC_006146.1 + 99308 0.66 0.976047
Target:  5'- cCGCCUGGUcagggCCAGAccuGCUGCGgaaGCc -3'
miRNA:   3'- -GUGGACCGa----GGUCUucuUGAUGCg--CG- -5'
28828 3' -53.6 NC_006146.1 + 101663 0.75 0.609467
Target:  5'- gACCUGGCcCUGGggGGaaacggGCUACGgGCg -3'
miRNA:   3'- gUGGACCGaGGUCuuCU------UGAUGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 102814 0.66 0.976047
Target:  5'- cCACCUGGaucgCgCGGggGcuCUGCGCuuGCu -3'
miRNA:   3'- -GUGGACCga--G-GUCuuCuuGAUGCG--CG- -5'
28828 3' -53.6 NC_006146.1 + 103436 0.66 0.973434
Target:  5'- gACCggGGCUUCGcGGAGcAC-AUGCGCa -3'
miRNA:   3'- gUGGa-CCGAGGU-CUUCuUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 106851 0.66 0.970621
Target:  5'- aGCCUGGCuggcuuUCUGGggGGACagUACaaGCa -3'
miRNA:   3'- gUGGACCG------AGGUCuuCUUG--AUGcgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.