miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28828 3' -53.6 NC_006146.1 + 169991 0.74 0.640499
Target:  5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3'
miRNA:   3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 169059 0.74 0.640499
Target:  5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3'
miRNA:   3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 168621 0.74 0.660136
Target:  5'- gGCCUGGCUCCGGu-GAccucaaagccaaACUgucggccaagcccACGCGCa -3'
miRNA:   3'- gUGGACCGAGGUCuuCU------------UGA-------------UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 168127 0.74 0.640499
Target:  5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3'
miRNA:   3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 167195 0.74 0.640499
Target:  5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3'
miRNA:   3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 163194 0.66 0.970621
Target:  5'- gGCUUGGCUucugccccUCAGAGGAGC--CGgGCa -3'
miRNA:   3'- gUGGACCGA--------GGUCUUCUUGauGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 158468 0.66 0.973162
Target:  5'- gCGCCUGGCucaugugUCCAGAccGGGACUcUGgGa -3'
miRNA:   3'- -GUGGACCG-------AGGUCU--UCUUGAuGCgCg -5'
28828 3' -53.6 NC_006146.1 + 158215 0.67 0.940191
Target:  5'- gGCCaGGCUCCuGAAG---UugGUGCa -3'
miRNA:   3'- gUGGaCCGAGGuCUUCuugAugCGCG- -5'
28828 3' -53.6 NC_006146.1 + 157830 0.69 0.90105
Target:  5'- cCGCgCUGGCcCCGGAGGGG--ACGgGCa -3'
miRNA:   3'- -GUG-GACCGaGGUCUUCUUgaUGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 156709 0.68 0.919285
Target:  5'- cCGCCUccccguccaGGCUCCGGggGuccagcCUG-GCGCa -3'
miRNA:   3'- -GUGGA---------CCGAGGUCuuCuu----GAUgCGCG- -5'
28828 3' -53.6 NC_006146.1 + 156605 0.71 0.816858
Target:  5'- gCGCCa-GCUCCAGGgacAGGGCgcugcACGCGCg -3'
miRNA:   3'- -GUGGacCGAGGUCU---UCUUGa----UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 156588 0.66 0.976047
Target:  5'- cUACUuuuaggGGCUCCugGGggGAACUGgGCa- -3'
miRNA:   3'- -GUGGa-----CCGAGG--UCuuCUUGAUgCGcg -5'
28828 3' -53.6 NC_006146.1 + 156354 0.68 0.913449
Target:  5'- -uCCUGGgUCCAGGGccgccAUUAUGCGCa -3'
miRNA:   3'- guGGACCgAGGUCUUcu---UGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 155389 0.66 0.973162
Target:  5'- gCGCCUGGCucaugugUCCAGAccGGGACUcUGgGa -3'
miRNA:   3'- -GUGGACCG-------AGGUCU--UCUUGAuGCgCg -5'
28828 3' -53.6 NC_006146.1 + 153510 0.66 0.976047
Target:  5'- cUACUuuuaggGGCUCCugGGggGAACUGgGCa- -3'
miRNA:   3'- -GUGGa-----CCGAGG--UCuuCUUGAUgCGcg -5'
28828 3' -53.6 NC_006146.1 + 153276 0.68 0.913449
Target:  5'- -uCCUGGgUCCAGGGccgccAUUAUGCGCa -3'
miRNA:   3'- guGGACCgAGGUCUUcu---UGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 152311 0.66 0.973162
Target:  5'- gCGCCUGGCucaugugUCCAGAccGGGACUcUGgGa -3'
miRNA:   3'- -GUGGACCG-------AGGUCU--UCUUGAuGCgCg -5'
28828 3' -53.6 NC_006146.1 + 151654 0.66 0.97554
Target:  5'- cCGCCUGGCgacCCuggggucugucuGggGGACUGagggcgGCGCc -3'
miRNA:   3'- -GUGGACCGa--GGu-----------CuuCUUGAUg-----CGCG- -5'
28828 3' -53.6 NC_006146.1 + 151583 0.67 0.953329
Target:  5'- gGCCUGGUUgccguagcCCAuGAuGGAGCgGCGCGUg -3'
miRNA:   3'- gUGGACCGA--------GGU-CU-UCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 150432 0.66 0.976047
Target:  5'- cUACUuuuaggGGCUCCugGGggGAACUGgGCa- -3'
miRNA:   3'- -GUGGa-----CCGAGG--UCuuCUUGAUgCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.