miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28828 3' -53.6 NC_006146.1 + 150246 0.66 0.967601
Target:  5'- --aCUGGC-CaGGAAGGACU-CGUGCa -3'
miRNA:   3'- gugGACCGaGgUCUUCUUGAuGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 150198 0.68 0.913449
Target:  5'- -uCCUGGgUCCAGGGccgccAUUAUGCGCa -3'
miRNA:   3'- guGGACCgAGGUCUUcu---UGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 149233 0.66 0.973162
Target:  5'- gCGCCUGGCucaugugUCCAGAccGGGACUcUGgGa -3'
miRNA:   3'- -GUGGACCG-------AGGUCU--UCUUGAuGCgCg -5'
28828 3' -53.6 NC_006146.1 + 147771 0.66 0.976047
Target:  5'- aGCCcaGGCUCCcggccucucccaGGAAGAGCaGCG-GCa -3'
miRNA:   3'- gUGGa-CCGAGG------------UCUUCUUGaUGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 147354 0.66 0.976047
Target:  5'- cUACUuuuaggGGCUCCugGGggGAACUGgGCa- -3'
miRNA:   3'- -GUGGa-----CCGAGG--UCuuCUUGAUgCGcg -5'
28828 3' -53.6 NC_006146.1 + 147120 0.68 0.913449
Target:  5'- -uCCUGGgUCCAGGGccgccAUUAUGCGCa -3'
miRNA:   3'- guGGACCgAGGUCUUcu---UGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 146973 0.68 0.913449
Target:  5'- cCGCCcuuggGGCa--GGAGGGGCUGgGCGCa -3'
miRNA:   3'- -GUGGa----CCGaggUCUUCUUGAUgCGCG- -5'
28828 3' -53.6 NC_006146.1 + 146853 0.66 0.968835
Target:  5'- gGCCUGGCUCgGGGccgcgucaccccgccAGGGggACGaCGCc -3'
miRNA:   3'- gUGGACCGAGgUCU---------------UCUUgaUGC-GCG- -5'
28828 3' -53.6 NC_006146.1 + 146155 0.66 0.973162
Target:  5'- gCGCCUGGCucaugugUCCAGAccGGGACUcUGgGa -3'
miRNA:   3'- -GUGGACCG-------AGGUCU--UCUUGAuGCgCg -5'
28828 3' -53.6 NC_006146.1 + 144276 0.66 0.976047
Target:  5'- cUACUuuuaggGGCUCCugGGggGAACUGgGCa- -3'
miRNA:   3'- -GUGGa-----CCGAGG--UCuuCUUGAUgCGcg -5'
28828 3' -53.6 NC_006146.1 + 144042 0.68 0.913449
Target:  5'- -uCCUGGgUCCAGGGccgccAUUAUGCGCa -3'
miRNA:   3'- guGGACCgAGGUCUUcu---UGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 143077 0.66 0.973162
Target:  5'- gCGCCUGGCucaugugUCCAGAccGGGACUcUGgGa -3'
miRNA:   3'- -GUGGACCG-------AGGUCU--UCUUGAuGCgCg -5'
28828 3' -53.6 NC_006146.1 + 142560 0.66 0.960914
Target:  5'- aGCCUaGGCUa-GGcGGAGcCUGCGUGCg -3'
miRNA:   3'- gUGGA-CCGAggUCuUCUU-GAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 141201 0.72 0.751937
Target:  5'- aUACCaggGGCUCCugGGggGAACUGgGCa- -3'
miRNA:   3'- -GUGGa--CCGAGG--UCuuCUUGAUgCGcg -5'
28828 3' -53.6 NC_006146.1 + 138024 0.68 0.919285
Target:  5'- -cCCUGGUgCCAGGcaGGGACcuCGCGCc -3'
miRNA:   3'- guGGACCGaGGUCU--UCUUGauGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 137914 0.7 0.842286
Target:  5'- gGCCgggGGUUCCGGggGcAGCcgcgacccaGCGCGCc -3'
miRNA:   3'- gUGGa--CCGAGGUCuuC-UUGa--------UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 137832 0.66 0.973434
Target:  5'- gCACCUGGaaggCAGggGGGCUcgggguggguggGCGUGUc -3'
miRNA:   3'- -GUGGACCgag-GUCuuCUUGA------------UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 136759 0.71 0.808028
Target:  5'- uCGCCggGGCUCCGGGAGGcCcgGC-CGCg -3'
miRNA:   3'- -GUGGa-CCGAGGUCUUCUuGa-UGcGCG- -5'
28828 3' -53.6 NC_006146.1 + 136719 0.69 0.894492
Target:  5'- uGCCUGGC-CCAGGGuccGGCUGgGgGCg -3'
miRNA:   3'- gUGGACCGaGGUCUUc--UUGAUgCgCG- -5'
28828 3' -53.6 NC_006146.1 + 132094 0.67 0.940191
Target:  5'- gGCCUGGCUgCAGAugugcaccccgcAGGACUuccACaaGCa -3'
miRNA:   3'- gUGGACCGAgGUCU------------UCUUGA---UGcgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.