miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28828 3' -53.6 NC_006146.1 + 62508 0.84 0.205733
Target:  5'- gCACCUGGC-CCuGggGGGCUGCGUGUu -3'
miRNA:   3'- -GUGGACCGaGGuCuuCUUGAUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 156709 0.68 0.919285
Target:  5'- cCGCCUccccguccaGGCUCCGGggGuccagcCUG-GCGCa -3'
miRNA:   3'- -GUGGA---------CCGAGGUCuuCuu----GAUgCGCG- -5'
28828 3' -53.6 NC_006146.1 + 63992 0.68 0.92433
Target:  5'- uCugCUGGCUuccagucCCAGAGGAucccgACUAUGC-Ca -3'
miRNA:   3'- -GugGACCGA-------GGUCUUCU-----UGAUGCGcG- -5'
28828 3' -53.6 NC_006146.1 + 147771 0.66 0.976047
Target:  5'- aGCCcaGGCUCCcggccucucccaGGAAGAGCaGCG-GCa -3'
miRNA:   3'- gUGGa-CCGAGG------------UCUUCUUGaUGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 168127 0.74 0.640499
Target:  5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3'
miRNA:   3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 169059 0.74 0.640499
Target:  5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3'
miRNA:   3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 156605 0.71 0.816858
Target:  5'- gCGCCa-GCUCCAGGgacAGGGCgcugcACGCGCg -3'
miRNA:   3'- -GUGGacCGAGGUCU---UCUUGa----UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 127667 0.71 0.825517
Target:  5'- cUAUCUGcuGCUCCAGggGGGCUccucucaccaGCaGCGCc -3'
miRNA:   3'- -GUGGAC--CGAGGUCuuCUUGA----------UG-CGCG- -5'
28828 3' -53.6 NC_006146.1 + 128182 0.69 0.880678
Target:  5'- aCGCCgggaGGCggcCCAGggGGGCgcCGCGg -3'
miRNA:   3'- -GUGGa---CCGa--GGUCuuCUUGauGCGCg -5'
28828 3' -53.6 NC_006146.1 + 138024 0.68 0.919285
Target:  5'- -cCCUGGUgCCAGGcaGGGACcuCGCGCc -3'
miRNA:   3'- guGGACCGaGGUCU--UCUUGauGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 61494 0.68 0.913449
Target:  5'- uCACCagGGCUCCgAGGAGGcccCUGC-CGCc -3'
miRNA:   3'- -GUGGa-CCGAGG-UCUUCUu--GAUGcGCG- -5'
28828 3' -53.6 NC_006146.1 + 62996 0.7 0.86596
Target:  5'- gGCCcugGGCUCCGGGAGucugGCGgGUg -3'
miRNA:   3'- gUGGa--CCGAGGUCUUCuugaUGCgCG- -5'
28828 3' -53.6 NC_006146.1 + 45559 0.8 0.325034
Target:  5'- -cCCUGGcCUCCGcGAGGAGCU-CGCGCa -3'
miRNA:   3'- guGGACC-GAGGU-CUUCUUGAuGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 146973 0.68 0.913449
Target:  5'- cCGCCcuuggGGCa--GGAGGGGCUGgGCGCa -3'
miRNA:   3'- -GUGGa----CCGaggUCUUCUUGAUgCGCG- -5'
28828 3' -53.6 NC_006146.1 + 48224 0.74 0.640499
Target:  5'- gGCCUGGCgcgCCuGGGuGAGCgcCGCGCg -3'
miRNA:   3'- gUGGACCGa--GGuCUU-CUUGauGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 137914 0.7 0.842286
Target:  5'- gGCCgggGGUUCCGGggGcAGCcgcgacccaGCGCGCc -3'
miRNA:   3'- gUGGa--CCGAGGUCuuC-UUGa--------UGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 34194 0.68 0.919285
Target:  5'- -cCCUGGUgCCAGGcaGGGACcuCGCGCc -3'
miRNA:   3'- guGGACCGaGGUCU--UCUUGauGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 60142 0.68 0.923779
Target:  5'- gACCUGGUggggggugugugCCAGggGGAUUAgaagUGUGCu -3'
miRNA:   3'- gUGGACCGa-----------GGUCuuCUUGAU----GCGCG- -5'
28828 3' -53.6 NC_006146.1 + 167195 0.74 0.640499
Target:  5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3'
miRNA:   3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5'
28828 3' -53.6 NC_006146.1 + 169991 0.74 0.640499
Target:  5'- gCGCCcgGGgUCCcGggGGGCgGCGCGCg -3'
miRNA:   3'- -GUGGa-CCgAGGuCuuCUUGaUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.