miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28828 5' -55.1 NC_006146.1 + 113021 0.66 0.949459
Target:  5'- -gGCgauggaGCAGa-CGcCCGGCCAGGACGu -3'
miRNA:   3'- gaUGag----CGUCaaGC-GGCUGGUCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 114695 0.66 0.945157
Target:  5'- -gGCUCGCGGcUCGUCcgcgaGACCcGGGCc -3'
miRNA:   3'- gaUGAGCGUCaAGCGG-----CUGGuCCUGu -5'
28828 5' -55.1 NC_006146.1 + 25263 0.66 0.945157
Target:  5'- -gGCUCGCccgUCuCCaGCCAGGACGa -3'
miRNA:   3'- gaUGAGCGucaAGcGGcUGGUCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 99180 0.66 0.93585
Target:  5'- -aGCUCGUAGa--GCC-ACCAGGugGc -3'
miRNA:   3'- gaUGAGCGUCaagCGGcUGGUCCugU- -5'
28828 5' -55.1 NC_006146.1 + 40980 0.66 0.93585
Target:  5'- -cGC-CGUGGUgccgCGCCGGcgccCCAGGGCGc -3'
miRNA:   3'- gaUGaGCGUCAa---GCGGCU----GGUCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 41247 0.66 0.934373
Target:  5'- cCUGCUCugguacagaccccaGaCGGa--GCCGACCGGGGCGu -3'
miRNA:   3'- -GAUGAG--------------C-GUCaagCGGCUGGUCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 128798 0.67 0.925596
Target:  5'- --cCUCGUAGUcgugCGCCGuCCgcgaAGGACGg -3'
miRNA:   3'- gauGAGCGUCAa---GCGGCuGG----UCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 160985 0.67 0.925596
Target:  5'- cCUGCUCGCGGgcuccgUCGCCuccuGCCuGGcCGu -3'
miRNA:   3'- -GAUGAGCGUCa-----AGCGGc---UGGuCCuGU- -5'
28828 5' -55.1 NC_006146.1 + 130524 0.67 0.925596
Target:  5'- aCUACgCGCcGggCGgCGACCAGGGg- -3'
miRNA:   3'- -GAUGaGCGuCaaGCgGCUGGUCCUgu -5'
28828 5' -55.1 NC_006146.1 + 80317 0.67 0.925596
Target:  5'- -aGgUCGUGGUUUGgCGACUGGGGCc -3'
miRNA:   3'- gaUgAGCGUCAAGCgGCUGGUCCUGu -5'
28828 5' -55.1 NC_006146.1 + 55542 0.67 0.920112
Target:  5'- -aGCUcCGCcGccaCGCCGGCCAGGAa- -3'
miRNA:   3'- gaUGA-GCGuCaa-GCGGCUGGUCCUgu -5'
28828 5' -55.1 NC_006146.1 + 150313 0.67 0.920112
Target:  5'- -gACUCGUAGUccUCGCCcgGGCgCAGGcCGg -3'
miRNA:   3'- gaUGAGCGUCA--AGCGG--CUG-GUCCuGU- -5'
28828 5' -55.1 NC_006146.1 + 10620 0.67 0.912629
Target:  5'- -cACUgaCGCAGUuuUCGCuagugggguuuaccCGGCCAGGGCu -3'
miRNA:   3'- gaUGA--GCGUCA--AGCG--------------GCUGGUCCUGu -5'
28828 5' -55.1 NC_006146.1 + 55285 0.67 0.910845
Target:  5'- -gGCUCGCGGUggGCagcagccggaaaaaGugCAGGGCGa -3'
miRNA:   3'- gaUGAGCGUCAagCGg-------------CugGUCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 127070 0.67 0.908434
Target:  5'- -gGCggCGCGGgaaGCCGaaaggGCCAGGGCGg -3'
miRNA:   3'- gaUGa-GCGUCaagCGGC-----UGGUCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 167744 0.67 0.902242
Target:  5'- gUGCUCGauCAGggCGCaggGGCCGGGugGg -3'
miRNA:   3'- gAUGAGC--GUCaaGCGg--CUGGUCCugU- -5'
28828 5' -55.1 NC_006146.1 + 46185 0.67 0.90034
Target:  5'- cCUACUUGCAGUUUGUgcuuguggaucucuCGGaguuUCAGGACGa -3'
miRNA:   3'- -GAUGAGCGUCAAGCG--------------GCU----GGUCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 19193 0.68 0.895819
Target:  5'- cCUACUucuaCGCAGgcgCGCCucagGGCCuGGACGu -3'
miRNA:   3'- -GAUGA----GCGUCaa-GCGG----CUGGuCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 42816 0.68 0.882288
Target:  5'- --uCUCGCAGagCGUguaGACCAGGAUc -3'
miRNA:   3'- gauGAGCGUCaaGCGg--CUGGUCCUGu -5'
28828 5' -55.1 NC_006146.1 + 155146 0.68 0.860349
Target:  5'- -gGCgUCGCAGca-GCgGGCCAGGGCc -3'
miRNA:   3'- gaUG-AGCGUCaagCGgCUGGUCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.