Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28828 | 5' | -55.1 | NC_006146.1 | + | 76554 | 1.09 | 0.004033 |
Target: 5'- aCUACUCGCAGUUCGCCGACCAGGACAu -3' miRNA: 3'- -GAUGAGCGUCAAGCGGCUGGUCCUGU- -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 126712 | 0.75 | 0.515632 |
Target: 5'- uUACUCGCAGggCGCagaGGCUggAGGGCAc -3' miRNA: 3'- gAUGAGCGUCaaGCGg--CUGG--UCCUGU- -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 167355 | 0.74 | 0.575244 |
Target: 5'- gCUGCacgCGCGGcggCGCCGGCCGGGGg- -3' miRNA: 3'- -GAUGa--GCGUCaa-GCGGCUGGUCCUgu -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 170150 | 0.74 | 0.575244 |
Target: 5'- gCUGCacgCGCGGcggCGCCGGCCGGGGg- -3' miRNA: 3'- -GAUGa--GCGUCaa-GCGGCUGGUCCUgu -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 169219 | 0.74 | 0.575244 |
Target: 5'- gCUGCacgCGCGGcggCGCCGGCCGGGGg- -3' miRNA: 3'- -GAUGa--GCGUCaa-GCGGCUGGUCCUgu -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 168287 | 0.74 | 0.575244 |
Target: 5'- gCUGCacgCGCGGcggCGCCGGCCGGGGg- -3' miRNA: 3'- -GAUGa--GCGUCaa-GCGGCUGGUCCUgu -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 112757 | 0.74 | 0.585356 |
Target: 5'- ----gCGCAGaa-GCCGGCCAGGGCAu -3' miRNA: 3'- gaugaGCGUCaagCGGCUGGUCCUGU- -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 109682 | 0.72 | 0.676999 |
Target: 5'- --cCUCGCAGUcCGguacCCGAUCGGGGCAg -3' miRNA: 3'- gauGAGCGUCAaGC----GGCUGGUCCUGU- -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 168817 | 0.71 | 0.727007 |
Target: 5'- uUGCUCGCuGUUgcccaauagaaUGCCGACgAGGGCc -3' miRNA: 3'- gAUGAGCGuCAA-----------GCGGCUGgUCCUGu -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 53384 | 0.7 | 0.784226 |
Target: 5'- uUGCUCGC-GUUCcuGCCGuuaGCCAGGAgAa -3' miRNA: 3'- gAUGAGCGuCAAG--CGGC---UGGUCCUgU- -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 127571 | 0.7 | 0.784226 |
Target: 5'- cCUGCUgGCccugggcggccgAGgccgCGCCGGCCGGGugAg -3' miRNA: 3'- -GAUGAgCG------------UCaa--GCGGCUGGUCCugU- -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 155567 | 0.7 | 0.784226 |
Target: 5'- -gGCUCGCgcGGggCGCCcGCCAgGGGCAc -3' miRNA: 3'- gaUGAGCG--UCaaGCGGcUGGU-CCUGU- -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 155146 | 0.68 | 0.860349 |
Target: 5'- -gGCgUCGCAGca-GCgGGCCAGGGCc -3' miRNA: 3'- gaUG-AGCGUCaagCGgCUGGUCCUGu -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 42816 | 0.68 | 0.882288 |
Target: 5'- --uCUCGCAGagCGUguaGACCAGGAUc -3' miRNA: 3'- gauGAGCGUCaaGCGg--CUGGUCCUGu -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 19193 | 0.68 | 0.895819 |
Target: 5'- cCUACUucuaCGCAGgcgCGCCucagGGCCuGGACGu -3' miRNA: 3'- -GAUGA----GCGUCaa-GCGG----CUGGuCCUGU- -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 167744 | 0.67 | 0.902242 |
Target: 5'- gUGCUCGauCAGggCGCaggGGCCGGGugGg -3' miRNA: 3'- gAUGAGC--GUCaaGCGg--CUGGUCCugU- -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 80317 | 0.67 | 0.925596 |
Target: 5'- -aGgUCGUGGUUUGgCGACUGGGGCc -3' miRNA: 3'- gaUgAGCGUCAAGCgGCUGGUCCUGu -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 46185 | 0.67 | 0.90034 |
Target: 5'- cCUACUUGCAGUUUGUgcuuguggaucucuCGGaguuUCAGGACGa -3' miRNA: 3'- -GAUGAGCGUCAAGCG--------------GCU----GGUCCUGU- -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 127070 | 0.67 | 0.908434 |
Target: 5'- -gGCggCGCGGgaaGCCGaaaggGCCAGGGCGg -3' miRNA: 3'- gaUGa-GCGUCaagCGGC-----UGGUCCUGU- -5' |
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28828 | 5' | -55.1 | NC_006146.1 | + | 55285 | 0.67 | 0.910845 |
Target: 5'- -gGCUCGCGGUggGCagcagccggaaaaaGugCAGGGCGa -3' miRNA: 3'- gaUGAGCGUCAagCGg-------------CugGUCCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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