miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28828 5' -55.1 NC_006146.1 + 76554 1.09 0.004033
Target:  5'- aCUACUCGCAGUUCGCCGACCAGGACAu -3'
miRNA:   3'- -GAUGAGCGUCAAGCGGCUGGUCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 126712 0.75 0.515632
Target:  5'- uUACUCGCAGggCGCagaGGCUggAGGGCAc -3'
miRNA:   3'- gAUGAGCGUCaaGCGg--CUGG--UCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 167355 0.74 0.575244
Target:  5'- gCUGCacgCGCGGcggCGCCGGCCGGGGg- -3'
miRNA:   3'- -GAUGa--GCGUCaa-GCGGCUGGUCCUgu -5'
28828 5' -55.1 NC_006146.1 + 170150 0.74 0.575244
Target:  5'- gCUGCacgCGCGGcggCGCCGGCCGGGGg- -3'
miRNA:   3'- -GAUGa--GCGUCaa-GCGGCUGGUCCUgu -5'
28828 5' -55.1 NC_006146.1 + 169219 0.74 0.575244
Target:  5'- gCUGCacgCGCGGcggCGCCGGCCGGGGg- -3'
miRNA:   3'- -GAUGa--GCGUCaa-GCGGCUGGUCCUgu -5'
28828 5' -55.1 NC_006146.1 + 168287 0.74 0.575244
Target:  5'- gCUGCacgCGCGGcggCGCCGGCCGGGGg- -3'
miRNA:   3'- -GAUGa--GCGUCaa-GCGGCUGGUCCUgu -5'
28828 5' -55.1 NC_006146.1 + 112757 0.74 0.585356
Target:  5'- ----gCGCAGaa-GCCGGCCAGGGCAu -3'
miRNA:   3'- gaugaGCGUCaagCGGCUGGUCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 109682 0.72 0.676999
Target:  5'- --cCUCGCAGUcCGguacCCGAUCGGGGCAg -3'
miRNA:   3'- gauGAGCGUCAaGC----GGCUGGUCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 168817 0.71 0.727007
Target:  5'- uUGCUCGCuGUUgcccaauagaaUGCCGACgAGGGCc -3'
miRNA:   3'- gAUGAGCGuCAA-----------GCGGCUGgUCCUGu -5'
28828 5' -55.1 NC_006146.1 + 53384 0.7 0.784226
Target:  5'- uUGCUCGC-GUUCcuGCCGuuaGCCAGGAgAa -3'
miRNA:   3'- gAUGAGCGuCAAG--CGGC---UGGUCCUgU- -5'
28828 5' -55.1 NC_006146.1 + 127571 0.7 0.784226
Target:  5'- cCUGCUgGCccugggcggccgAGgccgCGCCGGCCGGGugAg -3'
miRNA:   3'- -GAUGAgCG------------UCaa--GCGGCUGGUCCugU- -5'
28828 5' -55.1 NC_006146.1 + 155567 0.7 0.784226
Target:  5'- -gGCUCGCgcGGggCGCCcGCCAgGGGCAc -3'
miRNA:   3'- gaUGAGCG--UCaaGCGGcUGGU-CCUGU- -5'
28828 5' -55.1 NC_006146.1 + 155146 0.68 0.860349
Target:  5'- -gGCgUCGCAGca-GCgGGCCAGGGCc -3'
miRNA:   3'- gaUG-AGCGUCaagCGgCUGGUCCUGu -5'
28828 5' -55.1 NC_006146.1 + 42816 0.68 0.882288
Target:  5'- --uCUCGCAGagCGUguaGACCAGGAUc -3'
miRNA:   3'- gauGAGCGUCaaGCGg--CUGGUCCUGu -5'
28828 5' -55.1 NC_006146.1 + 19193 0.68 0.895819
Target:  5'- cCUACUucuaCGCAGgcgCGCCucagGGCCuGGACGu -3'
miRNA:   3'- -GAUGA----GCGUCaa-GCGG----CUGGuCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 46185 0.67 0.90034
Target:  5'- cCUACUUGCAGUUUGUgcuuguggaucucuCGGaguuUCAGGACGa -3'
miRNA:   3'- -GAUGAGCGUCAAGCG--------------GCU----GGUCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 167744 0.67 0.902242
Target:  5'- gUGCUCGauCAGggCGCaggGGCCGGGugGg -3'
miRNA:   3'- gAUGAGC--GUCaaGCGg--CUGGUCCugU- -5'
28828 5' -55.1 NC_006146.1 + 127070 0.67 0.908434
Target:  5'- -gGCggCGCGGgaaGCCGaaaggGCCAGGGCGg -3'
miRNA:   3'- gaUGa-GCGUCaagCGGC-----UGGUCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 55285 0.67 0.910845
Target:  5'- -gGCUCGCGGUggGCagcagccggaaaaaGugCAGGGCGa -3'
miRNA:   3'- gaUGAGCGUCAagCGg-------------CugGUCCUGU- -5'
28828 5' -55.1 NC_006146.1 + 10620 0.67 0.912629
Target:  5'- -cACUgaCGCAGUuuUCGCuagugggguuuaccCGGCCAGGGCu -3'
miRNA:   3'- gaUGA--GCGUCA--AGCG--------------GCUGGUCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.