miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 3' -61.4 NC_006146.1 + 35022 0.66 0.707607
Target:  5'- -uGCUCGCCaCGCCCGGGuCAuGAccugucacuCGCCUu -3'
miRNA:   3'- ccCGAGCGG-GUGGGUCU-GU-CU---------GCGGA- -5'
28829 3' -61.4 NC_006146.1 + 5143 0.66 0.707607
Target:  5'- -cGCUCaCCCGCCCuGcgAGACGCCc -3'
miRNA:   3'- ccCGAGcGGGUGGGuCugUCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 151924 0.66 0.707607
Target:  5'- uGGCUCcgGCCCugCCgcccucucuagGGGCcgcuGGCGCCa -3'
miRNA:   3'- cCCGAG--CGGGugGG-----------UCUGu---CUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 91266 0.66 0.701856
Target:  5'- gGGGCUCGCCgGCCUgugacccuguccccgGGACgAGcucaccgguGCGCUg -3'
miRNA:   3'- -CCCGAGCGGgUGGG---------------UCUG-UC---------UGCGGa -5'
28829 3' -61.4 NC_006146.1 + 53448 0.66 0.69801
Target:  5'- aGGGCgguggUGUCUGCCCGGG-AGGCGCg- -3'
miRNA:   3'- -CCCGa----GCGGGUGGGUCUgUCUGCGga -5'
28829 3' -61.4 NC_006146.1 + 22056 0.66 0.69801
Target:  5'- aGGGUUagaGCCCuccggcggccggACCCGaGgAGGCGCCUg -3'
miRNA:   3'- -CCCGAg--CGGG------------UGGGUcUgUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 18978 0.66 0.69801
Target:  5'- aGGGUUagaGCCCuccggcggccggACCCGaGgAGGCGCCUg -3'
miRNA:   3'- -CCCGAg--CGGG------------UGGGUcUgUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 25134 0.66 0.69801
Target:  5'- aGGGUUagaGCCCuccggcggccggACCCGaGgAGGCGCCUg -3'
miRNA:   3'- -CCCGAg--CGGG------------UGGGUcUgUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 115076 0.66 0.69801
Target:  5'- uGGCcgggUGCCCACCCAGGCGcugGCUg -3'
miRNA:   3'- cCCGa---GCGGGUGGGUCUGUcugCGGa -5'
28829 3' -61.4 NC_006146.1 + 12822 0.66 0.69801
Target:  5'- aGGGUUagaGCCCuccggcggccggACCCGaGgAGGCGCCUg -3'
miRNA:   3'- -CCCGAg--CGGG------------UGGGUcUgUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 83674 0.66 0.69801
Target:  5'- uGGGUUgG-CCACCCAGgugauggcuGCGGcCGCCa -3'
miRNA:   3'- -CCCGAgCgGGUGGGUC---------UGUCuGCGGa -5'
28829 3' -61.4 NC_006146.1 + 28212 0.66 0.69801
Target:  5'- aGGGUUagaGCCCuccggcggccggACCCGaGgAGGCGCCUg -3'
miRNA:   3'- -CCCGAg--CGGG------------UGGGUcUgUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 15901 0.66 0.69801
Target:  5'- aGGGUUagaGCCCuccggcggccggACCCGaGgAGGCGCCUg -3'
miRNA:   3'- -CCCGAg--CGGG------------UGGGUcUgUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 15310 0.66 0.688363
Target:  5'- gGGGCcggaggccaGCCCcgguguGCCCcuGGCGGGCGCCc -3'
miRNA:   3'- -CCCGag-------CGGG------UGGGu-CUGUCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 16254 0.66 0.688363
Target:  5'- cGGCcUGCCCggccuGCCCGGccucgcucCGGGCGCCUc -3'
miRNA:   3'- cCCGaGCGGG-----UGGGUCu-------GUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 22410 0.66 0.688363
Target:  5'- cGGCcUGCCCggccuGCCCGGccucgcucCGGGCGCCUc -3'
miRNA:   3'- cCCGaGCGGG-----UGGGUCu-------GUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 19332 0.66 0.688363
Target:  5'- cGGCcUGCCCggccuGCCCGGccucgcucCGGGCGCCUc -3'
miRNA:   3'- cCCGaGCGGG-----UGGGUCu-------GUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 25488 0.66 0.688363
Target:  5'- cGGCcUGCCCggccuGCCCGGccucgcucCGGGCGCCUc -3'
miRNA:   3'- cCCGaGCGGG-----UGGGUCu-------GUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 28566 0.66 0.688363
Target:  5'- cGGCcUGCCCggccuGCCCGGccucgcucCGGGCGCCUc -3'
miRNA:   3'- cCCGaGCGGG-----UGGGUCu-------GUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 13176 0.66 0.688363
Target:  5'- cGGCcUGCCCggccuGCCCGGccucgcucCGGGCGCCUc -3'
miRNA:   3'- cCCGaGCGGG-----UGGGUCu-------GUCUGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.