miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2883 5' -61.5 NC_001493.1 + 30501 0.66 0.599008
Target:  5'- uGUCUCGGucuguCCGGGGCgaucccccuUGCCgucaACGCc -3'
miRNA:   3'- -CAGAGCCu----GGCCCCGac-------ACGGg---UGUG- -5'
2883 5' -61.5 NC_001493.1 + 102165 0.67 0.55941
Target:  5'- aUCUCGGACCGGGuGuCUcGaGCaCGCGCa -3'
miRNA:   3'- cAGAGCCUGGCCC-C-GA-CaCGgGUGUG- -5'
2883 5' -61.5 NC_001493.1 + 102294 0.67 0.539876
Target:  5'- -cCUCGGugCucaGGGCcgccUGUGCCCGCcCg -3'
miRNA:   3'- caGAGCCugGc--CCCG----ACACGGGUGuG- -5'
2883 5' -61.5 NC_001493.1 + 129007 0.68 0.524416
Target:  5'- aGUCUCccagGGGCCGGuagccGaucucgcaucucuuuCUGUGCCCGCACg -3'
miRNA:   3'- -CAGAG----CCUGGCCc----C---------------GACACGGGUGUG- -5'
2883 5' -61.5 NC_001493.1 + 13453 0.68 0.524416
Target:  5'- aGUCUCccagGGGCCGGuagccGaucucgcaucucuuuCUGUGCCCGCACg -3'
miRNA:   3'- -CAGAG----CCUGGCCc----C---------------GACACGGGUGUG- -5'
2883 5' -61.5 NC_001493.1 + 111837 0.69 0.437626
Target:  5'- aUCaUCagacGACCGGGGCUgGUGCUCGCGg -3'
miRNA:   3'- cAG-AGc---CUGGCCCCGA-CACGGGUGUg -5'
2883 5' -61.5 NC_001493.1 + 126221 1.06 0.001168
Target:  5'- aGUCUCGGACCGGGGCUGUGCCCACAUg -3'
miRNA:   3'- -CAGAGCCUGGCCCCGACACGGGUGUG- -5'
2883 5' -61.5 NC_001493.1 + 10666 1.06 0.001168
Target:  5'- aGUCUCGGACCGGGGCUGUGCCCACAUg -3'
miRNA:   3'- -CAGAGCCUGGCCCCGACACGGGUGUG- -5'
2883 5' -61.5 NC_001493.1 + 126144 1.09 0.000716
Target:  5'- aGUCUCGGACCGGGGCUGUGCCCACACg -3'
miRNA:   3'- -CAGAGCCUGGCCCCGACACGGGUGUG- -5'
2883 5' -61.5 NC_001493.1 + 10589 1.09 0.000716
Target:  5'- aGUCUCGGACCGGGGCUGUGCCCACACg -3'
miRNA:   3'- -CAGAGCCUGGCCCCGACACGGGUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.