miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28830 3' -58.3 NC_006146.1 + 57203 0.66 0.869063
Target:  5'- cUGCCgCCGCCGUCccCGG-GCCggaggcCGGg -3'
miRNA:   3'- -ACGG-GGUGGCAGauGUCgCGGaa----GCC- -5'
28830 3' -58.3 NC_006146.1 + 52142 0.66 0.869063
Target:  5'- gGCCCCACCagGUCgaaGCcGCuGCCgUUGGc -3'
miRNA:   3'- aCGGGGUGG--CAGa--UGuCG-CGGaAGCC- -5'
28830 3' -58.3 NC_006146.1 + 33414 0.66 0.869063
Target:  5'- cGCCUgggCACCG-CUGCGcCGCCgcUCGGu -3'
miRNA:   3'- aCGGG---GUGGCaGAUGUcGCGGa-AGCC- -5'
28830 3' -58.3 NC_006146.1 + 41042 0.66 0.868342
Target:  5'- -cCCCC-CCGUCcGCGGCGgcCCUgggggccUCGGg -3'
miRNA:   3'- acGGGGuGGCAGaUGUCGC--GGA-------AGCC- -5'
28830 3' -58.3 NC_006146.1 + 47505 0.66 0.861761
Target:  5'- -aCCCCaagGCCGgggaCUACAGCGgCagugUCGGg -3'
miRNA:   3'- acGGGG---UGGCa---GAUGUCGCgGa---AGCC- -5'
28830 3' -58.3 NC_006146.1 + 106465 0.66 0.861761
Target:  5'- aGCCCCuCUGUCUccugGCAGCguacGCCgccgUGGc -3'
miRNA:   3'- aCGGGGuGGCAGA----UGUCG----CGGaa--GCC- -5'
28830 3' -58.3 NC_006146.1 + 41338 0.66 0.86176
Target:  5'- cGCCCCaACCuaUCUGgccCAGgGCCUggCGGu -3'
miRNA:   3'- aCGGGG-UGGc-AGAU---GUCgCGGAa-GCC- -5'
28830 3' -58.3 NC_006146.1 + 1982 0.66 0.861019
Target:  5'- gGCCCCcUCGUCUccagaaccugcugACAGuCGCgCUgCGGg -3'
miRNA:   3'- aCGGGGuGGCAGA-------------UGUC-GCG-GAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 39687 0.66 0.854262
Target:  5'- gGCUCCuggGcCUGCAGCGCCgcucCGGa -3'
miRNA:   3'- aCGGGGuggCaGAUGUCGCGGaa--GCC- -5'
28830 3' -58.3 NC_006146.1 + 123819 0.66 0.846574
Target:  5'- cGCagCCCACCGUCUucgucaGGCGCCcccUCa- -3'
miRNA:   3'- aCG--GGGUGGCAGAug----UCGCGGa--AGcc -5'
28830 3' -58.3 NC_006146.1 + 42733 0.66 0.846574
Target:  5'- cGCCUC-CCGgcgucgCUGCAuCGCCUgCGGc -3'
miRNA:   3'- aCGGGGuGGCa-----GAUGUcGCGGAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 153956 0.66 0.846574
Target:  5'- cGCUCC-CCGUUgggcACGGUGCCU-CGa -3'
miRNA:   3'- aCGGGGuGGCAGa---UGUCGCGGAaGCc -5'
28830 3' -58.3 NC_006146.1 + 54565 0.66 0.841872
Target:  5'- cGCCCCACCGUggGCAugaucagggaccucuGUGCCUc--- -3'
miRNA:   3'- aCGGGGUGGCAgaUGU---------------CGCGGAagcc -5'
28830 3' -58.3 NC_006146.1 + 95508 0.66 0.830651
Target:  5'- gGCCUCcauauccgggaGCUGUCgggUGCGGCGCCUggccaGGg -3'
miRNA:   3'- aCGGGG-----------UGGCAG---AUGUCGCGGAag---CC- -5'
28830 3' -58.3 NC_006146.1 + 156234 0.66 0.830651
Target:  5'- gGCCCCcucgGCCGUggACggGGUGCCguggUUGGg -3'
miRNA:   3'- aCGGGG----UGGCAgaUG--UCGCGGa---AGCC- -5'
28830 3' -58.3 NC_006146.1 + 159558 0.66 0.830651
Target:  5'- cUGCgCCAggcCCGUgUACAGCGUCU-CGu -3'
miRNA:   3'- -ACGgGGU---GGCAgAUGUCGCGGAaGCc -5'
28830 3' -58.3 NC_006146.1 + 43813 0.66 0.830651
Target:  5'- cUGUCCCACCGcUCcGCccuGGCcCUUUCGGc -3'
miRNA:   3'- -ACGGGGUGGC-AGaUG---UCGcGGAAGCC- -5'
28830 3' -58.3 NC_006146.1 + 52901 0.67 0.82243
Target:  5'- aGCCCCGCaugGUCUGCguGGC-CCccCGGg -3'
miRNA:   3'- aCGGGGUGg--CAGAUG--UCGcGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 117570 0.67 0.805505
Target:  5'- cGCCCCGCgGcCgcCGG-GCCUccUCGGg -3'
miRNA:   3'- aCGGGGUGgCaGauGUCgCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 162657 0.67 0.805505
Target:  5'- aUGCCCCcUCGUagGCAGUGCUUcaCGGg -3'
miRNA:   3'- -ACGGGGuGGCAgaUGUCGCGGAa-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.