Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28830 | 3' | -58.3 | NC_006146.1 | + | 57203 | 0.66 | 0.869063 |
Target: 5'- cUGCCgCCGCCGUCccCGG-GCCggaggcCGGg -3' miRNA: 3'- -ACGG-GGUGGCAGauGUCgCGGaa----GCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 52142 | 0.66 | 0.869063 |
Target: 5'- gGCCCCACCagGUCgaaGCcGCuGCCgUUGGc -3' miRNA: 3'- aCGGGGUGG--CAGa--UGuCG-CGGaAGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 41338 | 0.66 | 0.86176 |
Target: 5'- cGCCCCaACCuaUCUGgccCAGgGCCUggCGGu -3' miRNA: 3'- aCGGGG-UGGc-AGAU---GUCgCGGAa-GCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 1982 | 0.66 | 0.861019 |
Target: 5'- gGCCCCcUCGUCUccagaaccugcugACAGuCGCgCUgCGGg -3' miRNA: 3'- aCGGGGuGGCAGA-------------UGUC-GCG-GAaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 153956 | 0.66 | 0.846574 |
Target: 5'- cGCUCC-CCGUUgggcACGGUGCCU-CGa -3' miRNA: 3'- aCGGGGuGGCAGa---UGUCGCGGAaGCc -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 159558 | 0.66 | 0.830651 |
Target: 5'- cUGCgCCAggcCCGUgUACAGCGUCU-CGu -3' miRNA: 3'- -ACGgGGU---GGCAgAUGUCGCGGAaGCc -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 33414 | 0.66 | 0.869063 |
Target: 5'- cGCCUgggCACCG-CUGCGcCGCCgcUCGGu -3' miRNA: 3'- aCGGG---GUGGCaGAUGUcGCGGa-AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 156234 | 0.66 | 0.830651 |
Target: 5'- gGCCCCcucgGCCGUggACggGGUGCCguggUUGGg -3' miRNA: 3'- aCGGGG----UGGCAgaUG--UCGCGGa---AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 43813 | 0.66 | 0.830651 |
Target: 5'- cUGUCCCACCGcUCcGCccuGGCcCUUUCGGc -3' miRNA: 3'- -ACGGGGUGGC-AGaUG---UCGcGGAAGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 54565 | 0.66 | 0.841872 |
Target: 5'- cGCCCCACCGUggGCAugaucagggaccucuGUGCCUc--- -3' miRNA: 3'- aCGGGGUGGCAgaUGU---------------CGCGGAagcc -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 41042 | 0.66 | 0.868342 |
Target: 5'- -cCCCC-CCGUCcGCGGCGgcCCUgggggccUCGGg -3' miRNA: 3'- acGGGGuGGCAGaUGUCGC--GGA-------AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 106465 | 0.66 | 0.861761 |
Target: 5'- aGCCCCuCUGUCUccugGCAGCguacGCCgccgUGGc -3' miRNA: 3'- aCGGGGuGGCAGA----UGUCG----CGGaa--GCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 47505 | 0.66 | 0.861761 |
Target: 5'- -aCCCCaagGCCGgggaCUACAGCGgCagugUCGGg -3' miRNA: 3'- acGGGG---UGGCa---GAUGUCGCgGa---AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 39687 | 0.66 | 0.854262 |
Target: 5'- gGCUCCuggGcCUGCAGCGCCgcucCGGa -3' miRNA: 3'- aCGGGGuggCaGAUGUCGCGGaa--GCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 123819 | 0.66 | 0.846574 |
Target: 5'- cGCagCCCACCGUCUucgucaGGCGCCcccUCa- -3' miRNA: 3'- aCG--GGGUGGCAGAug----UCGCGGa--AGcc -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 42733 | 0.66 | 0.846574 |
Target: 5'- cGCCUC-CCGgcgucgCUGCAuCGCCUgCGGc -3' miRNA: 3'- aCGGGGuGGCa-----GAUGUcGCGGAaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 95508 | 0.66 | 0.830651 |
Target: 5'- gGCCUCcauauccgggaGCUGUCgggUGCGGCGCCUggccaGGg -3' miRNA: 3'- aCGGGG-----------UGGCAG---AUGUCGCGGAag---CC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 20795 | 0.67 | 0.787985 |
Target: 5'- gUGCaaCGCCGUCUACGGCuucacuggggugGCCaaCGGc -3' miRNA: 3'- -ACGggGUGGCAGAUGUCG------------CGGaaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 137475 | 0.67 | 0.796815 |
Target: 5'- aGCCCCaggACCGagcgGCGGCGCag-CGGu -3' miRNA: 3'- aCGGGG---UGGCaga-UGUCGCGgaaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 137597 | 0.67 | 0.796815 |
Target: 5'- aGCCCCaggACCGagcgGCGGCGCag-CGGu -3' miRNA: 3'- aCGGGG---UGGCaga-UGUCGCGgaaGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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