Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28830 | 3' | -58.3 | NC_006146.1 | + | 130506 | 0.67 | 0.779022 |
Target: 5'- uUGcCCCCGCgGgaggCUACuacGCGCCgggCGGc -3' miRNA: 3'- -AC-GGGGUGgCa---GAUGu--CGCGGaa-GCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 154976 | 0.67 | 0.779023 |
Target: 5'- aGCCUCGCCca----GGCGCCUccUCGGg -3' miRNA: 3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 46983 | 0.67 | 0.787985 |
Target: 5'- cGCCgCCAggaauugcgcCCGUCggaccgGCAGCGgCCcggUCGGa -3' miRNA: 3'- aCGG-GGU----------GGCAGa-----UGUCGC-GGa--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 66864 | 0.67 | 0.805504 |
Target: 5'- -uCCCCAgCGUCcAgGGCGCCcccCGGg -3' miRNA: 3'- acGGGGUgGCAGaUgUCGCGGaa-GCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 56659 | 0.67 | 0.796815 |
Target: 5'- cGUCgaucgCCGCCGUCUGCAaCGCCggaucgcCGGg -3' miRNA: 3'- aCGG-----GGUGGCAGAUGUcGCGGaa-----GCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 151662 | 0.67 | 0.805505 |
Target: 5'- cGaCCCUgggguCUGUCUgggggacugaggGCGGCGCCUUgGGg -3' miRNA: 3'- aC-GGGGu----GGCAGA------------UGUCGCGGAAgCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 117570 | 0.67 | 0.805505 |
Target: 5'- cGCCCCGCgGcCgcCGG-GCCUccUCGGg -3' miRNA: 3'- aCGGGGUGgCaGauGUCgCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 137597 | 0.67 | 0.796815 |
Target: 5'- aGCCCCaggACCGagcgGCGGCGCag-CGGu -3' miRNA: 3'- aCGGGG---UGGCaga-UGUCGCGgaaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 137475 | 0.67 | 0.796815 |
Target: 5'- aGCCCCaggACCGagcgGCGGCGCag-CGGu -3' miRNA: 3'- aCGGGG---UGGCaga-UGUCGCGgaaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 20795 | 0.67 | 0.787985 |
Target: 5'- gUGCaaCGCCGUCUACGGCuucacuggggugGCCaaCGGc -3' miRNA: 3'- -ACGggGUGGCAGAUGUCG------------CGGaaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 151898 | 0.67 | 0.779023 |
Target: 5'- aGCCUCGCCca----GGCGCCUccUCGGg -3' miRNA: 3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 148820 | 0.67 | 0.779023 |
Target: 5'- aGCCUCGCCca----GGCGCCUccUCGGg -3' miRNA: 3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 145742 | 0.67 | 0.779023 |
Target: 5'- aGCCUCGCCca----GGCGCCUccUCGGg -3' miRNA: 3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 142665 | 0.67 | 0.779023 |
Target: 5'- aGCCUCGCCca----GGCGCCUccUCGGg -3' miRNA: 3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 42916 | 0.67 | 0.796815 |
Target: 5'- cUGUCCCgGCUGUCagcaGCGGCGCCaagcucCGGa -3' miRNA: 3'- -ACGGGG-UGGCAGa---UGUCGCGGaa----GCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 19345 | 0.68 | 0.732509 |
Target: 5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3' miRNA: 3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 22423 | 0.68 | 0.732509 |
Target: 5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3' miRNA: 3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 16267 | 0.68 | 0.732509 |
Target: 5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3' miRNA: 3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 50037 | 0.68 | 0.74201 |
Target: 5'- gGCCCCguacucuaucGCCGUUaGCAGgGCCaggaagCGGa -3' miRNA: 3'- aCGGGG----------UGGCAGaUGUCgCGGaa----GCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 152039 | 0.68 | 0.732509 |
Target: 5'- gGcCCCCGCaCGUCcaccaccccgGCAGCGCC--CGGg -3' miRNA: 3'- aC-GGGGUG-GCAGa---------UGUCGCGGaaGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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