miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28830 3' -58.3 NC_006146.1 + 75608 1.11 0.00165
Target:  5'- cUGCCCCACCGUCUACAGCGCCUUCGGg -3'
miRNA:   3'- -ACGGGGUGGCAGAUGUCGCGGAAGCC- -5'
28830 3' -58.3 NC_006146.1 + 795 0.77 0.269706
Target:  5'- cGCCCCGCCGgccccccCUGCGGCGCCg---- -3'
miRNA:   3'- aCGGGGUGGCa------GAUGUCGCGGaagcc -5'
28830 3' -58.3 NC_006146.1 + 51938 0.73 0.479289
Target:  5'- gGCCCCgguGCgGUCUGCgcgccaacuGGCGCCgaCGGg -3'
miRNA:   3'- aCGGGG---UGgCAGAUG---------UCGCGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 72489 0.73 0.47929
Target:  5'- cGCUUCcCCGUgccuggCUGCAGCGCCUgCGGa -3'
miRNA:   3'- aCGGGGuGGCA------GAUGUCGCGGAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 117099 0.72 0.507243
Target:  5'- aGCCCC-CCG-CUAUGGaCGCCgcgCGGg -3'
miRNA:   3'- aCGGGGuGGCaGAUGUC-GCGGaa-GCC- -5'
28830 3' -58.3 NC_006146.1 + 3590 0.72 0.516715
Target:  5'- cGCCCCGCCGgccccccCUGCAGgCGCCg---- -3'
miRNA:   3'- aCGGGGUGGCa------GAUGUC-GCGGaagcc -5'
28830 3' -58.3 NC_006146.1 + 1726 0.72 0.516715
Target:  5'- cGCCCCGCCGgccccccCUGCAGgCGCCg---- -3'
miRNA:   3'- aCGGGGUGGCa------GAUGUC-GCGGaagcc -5'
28830 3' -58.3 NC_006146.1 + 2658 0.72 0.516715
Target:  5'- cGCCCCGCCGgccccccCUGCAGgCGCCg---- -3'
miRNA:   3'- aCGGGGUGGCa------GAUGUC-GCGGaagcc -5'
28830 3' -58.3 NC_006146.1 + 156489 0.71 0.565032
Target:  5'- gUGCCCC-CCGuaaaacUCUACGGCGUacgCGGc -3'
miRNA:   3'- -ACGGGGuGGC------AGAUGUCGCGgaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 65042 0.71 0.594598
Target:  5'- uUGCCUCcCCGgcuuccucgagcUCUugGCAGCGCCUcCGGa -3'
miRNA:   3'- -ACGGGGuGGC------------AGA--UGUCGCGGAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 161009 0.7 0.614448
Target:  5'- aGCCCCauGCCGUgUGCAuGCGuaCCUgaagCGGg -3'
miRNA:   3'- aCGGGG--UGGCAgAUGU-CGC--GGAa---GCC- -5'
28830 3' -58.3 NC_006146.1 + 48309 0.7 0.634348
Target:  5'- cGCCcuCCACCGUCggaGGUGCUggCGGu -3'
miRNA:   3'- aCGG--GGUGGCAGaugUCGCGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 22467 0.7 0.654242
Target:  5'- aUGCCUgCACCagaUCaUACAGCGCCUUCc- -3'
miRNA:   3'- -ACGGG-GUGGc--AG-AUGUCGCGGAAGcc -5'
28830 3' -58.3 NC_006146.1 + 98314 0.69 0.664168
Target:  5'- gUGCUCCgugGCCGUCUggcACGGgGCCgggcgCGGc -3'
miRNA:   3'- -ACGGGG---UGGCAGA---UGUCgCGGaa---GCC- -5'
28830 3' -58.3 NC_006146.1 + 111461 0.69 0.683937
Target:  5'- aGUCCUGCCccCUGCccuGCGCCUUCGu -3'
miRNA:   3'- aCGGGGUGGcaGAUGu--CGCGGAAGCc -5'
28830 3' -58.3 NC_006146.1 + 43420 0.69 0.683937
Target:  5'- -cCCCCGCCGUCUccucguccauCAGUaGCCUgCGGg -3'
miRNA:   3'- acGGGGUGGCAGAu---------GUCG-CGGAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 98437 0.69 0.683937
Target:  5'- cGCCCagaACCGguuuCGGCGCCgccCGGg -3'
miRNA:   3'- aCGGGg--UGGCagauGUCGCGGaa-GCC- -5'
28830 3' -58.3 NC_006146.1 + 129609 0.69 0.683938
Target:  5'- aUGCCuCCGCCGUCUcCGuCGCCggguccuccgCGGg -3'
miRNA:   3'- -ACGG-GGUGGCAGAuGUcGCGGaa--------GCC- -5'
28830 3' -58.3 NC_006146.1 + 100736 0.69 0.693766
Target:  5'- gGCCUCGCCGgccacCAGCGCCc-CGGc -3'
miRNA:   3'- aCGGGGUGGCagau-GUCGCGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 111871 0.69 0.703546
Target:  5'- cGCCCuCACCGcCaGCGGUGCgUUCa- -3'
miRNA:   3'- aCGGG-GUGGCaGaUGUCGCGgAAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.