Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28830 | 3' | -58.3 | NC_006146.1 | + | 46069 | 0.69 | 0.713268 |
Target: 5'- gUGCCauaGCUG-CUGCAGgGCCU-CGGg -3' miRNA: 3'- -ACGGgg-UGGCaGAUGUCgCGGAaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 125196 | 0.69 | 0.713269 |
Target: 5'- gGCCCCGCUGcUCUACuGCGa---CGGg -3' miRNA: 3'- aCGGGGUGGC-AGAUGuCGCggaaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 13189 | 0.68 | 0.732509 |
Target: 5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3' miRNA: 3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 19345 | 0.68 | 0.732509 |
Target: 5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3' miRNA: 3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 16267 | 0.68 | 0.732509 |
Target: 5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3' miRNA: 3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 22423 | 0.68 | 0.732509 |
Target: 5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3' miRNA: 3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 25501 | 0.68 | 0.732509 |
Target: 5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3' miRNA: 3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 28579 | 0.68 | 0.732509 |
Target: 5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3' miRNA: 3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 9459 | 0.68 | 0.732509 |
Target: 5'- cGCCCCACgCGcCUugGGUuCCcgCGGg -3' miRNA: 3'- aCGGGGUG-GCaGAugUCGcGGaaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 152039 | 0.68 | 0.732509 |
Target: 5'- gGcCCCCGCaCGUCcaccaccccgGCAGCGCC--CGGg -3' miRNA: 3'- aC-GGGGUG-GCAGa---------UGUCGCGGaaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 50037 | 0.68 | 0.74201 |
Target: 5'- gGCCCCguacucuaucGCCGUUaGCAGgGCCaggaagCGGa -3' miRNA: 3'- aCGGGG----------UGGCAGaUGUCgCGGaa----GCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 54899 | 0.68 | 0.74201 |
Target: 5'- cGCUCgCGCCGUCU--GGCcgGCCUUCaGGg -3' miRNA: 3'- aCGGG-GUGGCAGAugUCG--CGGAAG-CC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 156912 | 0.68 | 0.760732 |
Target: 5'- aGCCCgGCCGaggcCUgggugGCGGCGCUgaCGGg -3' miRNA: 3'- aCGGGgUGGCa---GA-----UGUCGCGGaaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 158054 | 0.68 | 0.760732 |
Target: 5'- aGCCUCGCCcca---GGCGCCUccUCGGg -3' miRNA: 3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 127410 | 0.68 | 0.769935 |
Target: 5'- gGCCCCGCCGccggagccggugUCaACGGCcGCCga-GGa -3' miRNA: 3'- aCGGGGUGGC------------AGaUGUCG-CGGaagCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 95201 | 0.67 | 0.779022 |
Target: 5'- gGUCCCugCG-CUGCAGCuCCUccaGGg -3' miRNA: 3'- aCGGGGugGCaGAUGUCGcGGAag-CC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 130506 | 0.67 | 0.779022 |
Target: 5'- uUGcCCCCGCgGgaggCUACuacGCGCCgggCGGc -3' miRNA: 3'- -AC-GGGGUGgCa---GAUGu--CGCGGaa-GCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 148820 | 0.67 | 0.779023 |
Target: 5'- aGCCUCGCCca----GGCGCCUccUCGGg -3' miRNA: 3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 145742 | 0.67 | 0.779023 |
Target: 5'- aGCCUCGCCca----GGCGCCUccUCGGg -3' miRNA: 3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 142665 | 0.67 | 0.779023 |
Target: 5'- aGCCUCGCCca----GGCGCCUccUCGGg -3' miRNA: 3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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