miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28830 3' -58.3 NC_006146.1 + 795 0.77 0.269706
Target:  5'- cGCCCCGCCGgccccccCUGCGGCGCCg---- -3'
miRNA:   3'- aCGGGGUGGCa------GAUGUCGCGGaagcc -5'
28830 3' -58.3 NC_006146.1 + 1726 0.72 0.516715
Target:  5'- cGCCCCGCCGgccccccCUGCAGgCGCCg---- -3'
miRNA:   3'- aCGGGGUGGCa------GAUGUC-GCGGaagcc -5'
28830 3' -58.3 NC_006146.1 + 1982 0.66 0.861019
Target:  5'- gGCCCCcUCGUCUccagaaccugcugACAGuCGCgCUgCGGg -3'
miRNA:   3'- aCGGGGuGGCAGA-------------UGUC-GCG-GAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 2658 0.72 0.516715
Target:  5'- cGCCCCGCCGgccccccCUGCAGgCGCCg---- -3'
miRNA:   3'- aCGGGGUGGCa------GAUGUC-GCGGaagcc -5'
28830 3' -58.3 NC_006146.1 + 3590 0.72 0.516715
Target:  5'- cGCCCCGCCGgccccccCUGCAGgCGCCg---- -3'
miRNA:   3'- aCGGGGUGGCa------GAUGUC-GCGGaagcc -5'
28830 3' -58.3 NC_006146.1 + 9459 0.68 0.732509
Target:  5'- cGCCCCACgCGcCUugGGUuCCcgCGGg -3'
miRNA:   3'- aCGGGGUG-GCaGAugUCGcGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 13189 0.68 0.732509
Target:  5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3'
miRNA:   3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 16267 0.68 0.732509
Target:  5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3'
miRNA:   3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 19345 0.68 0.732509
Target:  5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3'
miRNA:   3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 20795 0.67 0.787985
Target:  5'- gUGCaaCGCCGUCUACGGCuucacuggggugGCCaaCGGc -3'
miRNA:   3'- -ACGggGUGGCAGAUGUCG------------CGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 22423 0.68 0.732509
Target:  5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3'
miRNA:   3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 22467 0.7 0.654242
Target:  5'- aUGCCUgCACCagaUCaUACAGCGCCUUCc- -3'
miRNA:   3'- -ACGGG-GUGGc--AG-AUGUCGCGGAAGcc -5'
28830 3' -58.3 NC_006146.1 + 25501 0.68 0.732509
Target:  5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3'
miRNA:   3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 28579 0.68 0.732509
Target:  5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3'
miRNA:   3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 33414 0.66 0.869063
Target:  5'- cGCCUgggCACCG-CUGCGcCGCCgcUCGGu -3'
miRNA:   3'- aCGGG---GUGGCaGAUGUcGCGGa-AGCC- -5'
28830 3' -58.3 NC_006146.1 + 39687 0.66 0.854262
Target:  5'- gGCUCCuggGcCUGCAGCGCCgcucCGGa -3'
miRNA:   3'- aCGGGGuggCaGAUGUCGCGGaa--GCC- -5'
28830 3' -58.3 NC_006146.1 + 41042 0.66 0.868342
Target:  5'- -cCCCC-CCGUCcGCGGCGgcCCUgggggccUCGGg -3'
miRNA:   3'- acGGGGuGGCAGaUGUCGC--GGA-------AGCC- -5'
28830 3' -58.3 NC_006146.1 + 41338 0.66 0.86176
Target:  5'- cGCCCCaACCuaUCUGgccCAGgGCCUggCGGu -3'
miRNA:   3'- aCGGGG-UGGc-AGAU---GUCgCGGAa-GCC- -5'
28830 3' -58.3 NC_006146.1 + 42733 0.66 0.846574
Target:  5'- cGCCUC-CCGgcgucgCUGCAuCGCCUgCGGc -3'
miRNA:   3'- aCGGGGuGGCa-----GAUGUcGCGGAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 42916 0.67 0.796815
Target:  5'- cUGUCCCgGCUGUCagcaGCGGCGCCaagcucCGGa -3'
miRNA:   3'- -ACGGGG-UGGCAGa---UGUCGCGGaa----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.