miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28830 3' -58.3 NC_006146.1 + 43420 0.69 0.683937
Target:  5'- -cCCCCGCCGUCUccucguccauCAGUaGCCUgCGGg -3'
miRNA:   3'- acGGGGUGGCAGAu---------GUCG-CGGAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 43813 0.66 0.830651
Target:  5'- cUGUCCCACCGcUCcGCccuGGCcCUUUCGGc -3'
miRNA:   3'- -ACGGGGUGGC-AGaUG---UCGcGGAAGCC- -5'
28830 3' -58.3 NC_006146.1 + 46069 0.69 0.713268
Target:  5'- gUGCCauaGCUG-CUGCAGgGCCU-CGGg -3'
miRNA:   3'- -ACGGgg-UGGCaGAUGUCgCGGAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 46983 0.67 0.787985
Target:  5'- cGCCgCCAggaauugcgcCCGUCggaccgGCAGCGgCCcggUCGGa -3'
miRNA:   3'- aCGG-GGU----------GGCAGa-----UGUCGC-GGa--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 47505 0.66 0.861761
Target:  5'- -aCCCCaagGCCGgggaCUACAGCGgCagugUCGGg -3'
miRNA:   3'- acGGGG---UGGCa---GAUGUCGCgGa---AGCC- -5'
28830 3' -58.3 NC_006146.1 + 48309 0.7 0.634348
Target:  5'- cGCCcuCCACCGUCggaGGUGCUggCGGu -3'
miRNA:   3'- aCGG--GGUGGCAGaugUCGCGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 50037 0.68 0.74201
Target:  5'- gGCCCCguacucuaucGCCGUUaGCAGgGCCaggaagCGGa -3'
miRNA:   3'- aCGGGG----------UGGCAGaUGUCgCGGaa----GCC- -5'
28830 3' -58.3 NC_006146.1 + 51938 0.73 0.479289
Target:  5'- gGCCCCgguGCgGUCUGCgcgccaacuGGCGCCgaCGGg -3'
miRNA:   3'- aCGGGG---UGgCAGAUG---------UCGCGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 52142 0.66 0.869063
Target:  5'- gGCCCCACCagGUCgaaGCcGCuGCCgUUGGc -3'
miRNA:   3'- aCGGGGUGG--CAGa--UGuCG-CGGaAGCC- -5'
28830 3' -58.3 NC_006146.1 + 52901 0.67 0.82243
Target:  5'- aGCCCCGCaugGUCUGCguGGC-CCccCGGg -3'
miRNA:   3'- aCGGGGUGg--CAGAUG--UCGcGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 54565 0.66 0.841872
Target:  5'- cGCCCCACCGUggGCAugaucagggaccucuGUGCCUc--- -3'
miRNA:   3'- aCGGGGUGGCAgaUGU---------------CGCGGAagcc -5'
28830 3' -58.3 NC_006146.1 + 54899 0.68 0.74201
Target:  5'- cGCUCgCGCCGUCU--GGCcgGCCUUCaGGg -3'
miRNA:   3'- aCGGG-GUGGCAGAugUCG--CGGAAG-CC- -5'
28830 3' -58.3 NC_006146.1 + 56659 0.67 0.796815
Target:  5'- cGUCgaucgCCGCCGUCUGCAaCGCCggaucgcCGGg -3'
miRNA:   3'- aCGG-----GGUGGCAGAUGUcGCGGaa-----GCC- -5'
28830 3' -58.3 NC_006146.1 + 57203 0.66 0.869063
Target:  5'- cUGCCgCCGCCGUCccCGG-GCCggaggcCGGg -3'
miRNA:   3'- -ACGG-GGUGGCAGauGUCgCGGaa----GCC- -5'
28830 3' -58.3 NC_006146.1 + 65042 0.71 0.594598
Target:  5'- uUGCCUCcCCGgcuuccucgagcUCUugGCAGCGCCUcCGGa -3'
miRNA:   3'- -ACGGGGuGGC------------AGA--UGUCGCGGAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 66864 0.67 0.805504
Target:  5'- -uCCCCAgCGUCcAgGGCGCCcccCGGg -3'
miRNA:   3'- acGGGGUgGCAGaUgUCGCGGaa-GCC- -5'
28830 3' -58.3 NC_006146.1 + 72489 0.73 0.47929
Target:  5'- cGCUUCcCCGUgccuggCUGCAGCGCCUgCGGa -3'
miRNA:   3'- aCGGGGuGGCA------GAUGUCGCGGAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 75608 1.11 0.00165
Target:  5'- cUGCCCCACCGUCUACAGCGCCUUCGGg -3'
miRNA:   3'- -ACGGGGUGGCAGAUGUCGCGGAAGCC- -5'
28830 3' -58.3 NC_006146.1 + 95201 0.67 0.779022
Target:  5'- gGUCCCugCG-CUGCAGCuCCUccaGGg -3'
miRNA:   3'- aCGGGGugGCaGAUGUCGcGGAag-CC- -5'
28830 3' -58.3 NC_006146.1 + 95508 0.66 0.830651
Target:  5'- gGCCUCcauauccgggaGCUGUCgggUGCGGCGCCUggccaGGg -3'
miRNA:   3'- aCGGGG-----------UGGCAG---AUGUCGCGGAag---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.