miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28830 3' -58.3 NC_006146.1 + 162657 0.67 0.805505
Target:  5'- aUGCCCCcUCGUagGCAGUGCUUcaCGGg -3'
miRNA:   3'- -ACGGGGuGGCAgaUGUCGCGGAa-GCC- -5'
28830 3' -58.3 NC_006146.1 + 161009 0.7 0.614448
Target:  5'- aGCCCCauGCCGUgUGCAuGCGuaCCUgaagCGGg -3'
miRNA:   3'- aCGGGG--UGGCAgAUGU-CGC--GGAa---GCC- -5'
28830 3' -58.3 NC_006146.1 + 159558 0.66 0.830651
Target:  5'- cUGCgCCAggcCCGUgUACAGCGUCU-CGu -3'
miRNA:   3'- -ACGgGGU---GGCAgAUGUCGCGGAaGCc -5'
28830 3' -58.3 NC_006146.1 + 158054 0.68 0.760732
Target:  5'- aGCCUCGCCcca---GGCGCCUccUCGGg -3'
miRNA:   3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 156912 0.68 0.760732
Target:  5'- aGCCCgGCCGaggcCUgggugGCGGCGCUgaCGGg -3'
miRNA:   3'- aCGGGgUGGCa---GA-----UGUCGCGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 156489 0.71 0.565032
Target:  5'- gUGCCCC-CCGuaaaacUCUACGGCGUacgCGGc -3'
miRNA:   3'- -ACGGGGuGGC------AGAUGUCGCGgaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 156234 0.66 0.830651
Target:  5'- gGCCCCcucgGCCGUggACggGGUGCCguggUUGGg -3'
miRNA:   3'- aCGGGG----UGGCAgaUG--UCGCGGa---AGCC- -5'
28830 3' -58.3 NC_006146.1 + 154976 0.67 0.779023
Target:  5'- aGCCUCGCCca----GGCGCCUccUCGGg -3'
miRNA:   3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 153956 0.66 0.846574
Target:  5'- cGCUCC-CCGUUgggcACGGUGCCU-CGa -3'
miRNA:   3'- aCGGGGuGGCAGa---UGUCGCGGAaGCc -5'
28830 3' -58.3 NC_006146.1 + 152039 0.68 0.732509
Target:  5'- gGcCCCCGCaCGUCcaccaccccgGCAGCGCC--CGGg -3'
miRNA:   3'- aC-GGGGUG-GCAGa---------UGUCGCGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 151898 0.67 0.779023
Target:  5'- aGCCUCGCCca----GGCGCCUccUCGGg -3'
miRNA:   3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 151662 0.67 0.805505
Target:  5'- cGaCCCUgggguCUGUCUgggggacugaggGCGGCGCCUUgGGg -3'
miRNA:   3'- aC-GGGGu----GGCAGA------------UGUCGCGGAAgCC- -5'
28830 3' -58.3 NC_006146.1 + 148820 0.67 0.779023
Target:  5'- aGCCUCGCCca----GGCGCCUccUCGGg -3'
miRNA:   3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 145742 0.67 0.779023
Target:  5'- aGCCUCGCCca----GGCGCCUccUCGGg -3'
miRNA:   3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 142665 0.67 0.779023
Target:  5'- aGCCUCGCCca----GGCGCCUccUCGGg -3'
miRNA:   3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 137597 0.67 0.796815
Target:  5'- aGCCCCaggACCGagcgGCGGCGCag-CGGu -3'
miRNA:   3'- aCGGGG---UGGCaga-UGUCGCGgaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 137475 0.67 0.796815
Target:  5'- aGCCCCaggACCGagcgGCGGCGCag-CGGu -3'
miRNA:   3'- aCGGGG---UGGCaga-UGUCGCGgaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 130506 0.67 0.779022
Target:  5'- uUGcCCCCGCgGgaggCUACuacGCGCCgggCGGc -3'
miRNA:   3'- -AC-GGGGUGgCa---GAUGu--CGCGGaa-GCC- -5'
28830 3' -58.3 NC_006146.1 + 129609 0.69 0.683938
Target:  5'- aUGCCuCCGCCGUCUcCGuCGCCggguccuccgCGGg -3'
miRNA:   3'- -ACGG-GGUGGCAGAuGUcGCGGaa--------GCC- -5'
28830 3' -58.3 NC_006146.1 + 127410 0.68 0.769935
Target:  5'- gGCCCCGCCGccggagccggugUCaACGGCcGCCga-GGa -3'
miRNA:   3'- aCGGGGUGGC------------AGaUGUCG-CGGaagCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.