miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28830 3' -58.3 NC_006146.1 + 51938 0.73 0.479289
Target:  5'- gGCCCCgguGCgGUCUGCgcgccaacuGGCGCCgaCGGg -3'
miRNA:   3'- aCGGGG---UGgCAGAUG---------UCGCGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 50037 0.68 0.74201
Target:  5'- gGCCCCguacucuaucGCCGUUaGCAGgGCCaggaagCGGa -3'
miRNA:   3'- aCGGGG----------UGGCAGaUGUCgCGGaa----GCC- -5'
28830 3' -58.3 NC_006146.1 + 156912 0.68 0.760732
Target:  5'- aGCCCgGCCGaggcCUgggugGCGGCGCUgaCGGg -3'
miRNA:   3'- aCGGGgUGGCa---GA-----UGUCGCGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 52142 0.66 0.869063
Target:  5'- gGCCCCACCagGUCgaaGCcGCuGCCgUUGGc -3'
miRNA:   3'- aCGGGGUGG--CAGa--UGuCG-CGGaAGCC- -5'
28830 3' -58.3 NC_006146.1 + 98314 0.69 0.664168
Target:  5'- gUGCUCCgugGCCGUCUggcACGGgGCCgggcgCGGc -3'
miRNA:   3'- -ACGGGG---UGGCAGA---UGUCgCGGaa---GCC- -5'
28830 3' -58.3 NC_006146.1 + 111461 0.69 0.683937
Target:  5'- aGUCCUGCCccCUGCccuGCGCCUUCGu -3'
miRNA:   3'- aCGGGGUGGcaGAUGu--CGCGGAAGCc -5'
28830 3' -58.3 NC_006146.1 + 43420 0.69 0.683937
Target:  5'- -cCCCCGCCGUCUccucguccauCAGUaGCCUgCGGg -3'
miRNA:   3'- acGGGGUGGCAGAu---------GUCG-CGGAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 46069 0.69 0.713268
Target:  5'- gUGCCauaGCUG-CUGCAGgGCCU-CGGg -3'
miRNA:   3'- -ACGGgg-UGGCaGAUGUCgCGGAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 19345 0.68 0.732509
Target:  5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3'
miRNA:   3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 152039 0.68 0.732509
Target:  5'- gGcCCCCGCaCGUCcaccaccccgGCAGCGCC--CGGg -3'
miRNA:   3'- aC-GGGGUG-GCAGa---------UGUCGCGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 25501 0.68 0.732509
Target:  5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3'
miRNA:   3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 16267 0.68 0.732509
Target:  5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3'
miRNA:   3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 156489 0.71 0.565032
Target:  5'- gUGCCCC-CCGuaaaacUCUACGGCGUacgCGGc -3'
miRNA:   3'- -ACGGGGuGGC------AGAUGUCGCGgaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 28579 0.68 0.732509
Target:  5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3'
miRNA:   3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 65042 0.71 0.594598
Target:  5'- uUGCCUCcCCGgcuuccucgagcUCUugGCAGCGCCUcCGGa -3'
miRNA:   3'- -ACGGGGuGGC------------AGA--UGUCGCGGAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 13189 0.68 0.732509
Target:  5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3'
miRNA:   3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 9459 0.68 0.732509
Target:  5'- cGCCCCACgCGcCUugGGUuCCcgCGGg -3'
miRNA:   3'- aCGGGGUG-GCaGAugUCGcGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 54899 0.68 0.74201
Target:  5'- cGCUCgCGCCGUCU--GGCcgGCCUUCaGGg -3'
miRNA:   3'- aCGGG-GUGGCAGAugUCG--CGGAAG-CC- -5'
28830 3' -58.3 NC_006146.1 + 48309 0.7 0.634348
Target:  5'- cGCCcuCCACCGUCggaGGUGCUggCGGu -3'
miRNA:   3'- aCGG--GGUGGCAGaugUCGCGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 98437 0.69 0.683937
Target:  5'- cGCCCagaACCGguuuCGGCGCCgccCGGg -3'
miRNA:   3'- aCGGGg--UGGCagauGUCGCGGaa-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.