miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28830 3' -58.3 NC_006146.1 + 152039 0.68 0.732509
Target:  5'- gGcCCCCGCaCGUCcaccaccccgGCAGCGCC--CGGg -3'
miRNA:   3'- aC-GGGGUG-GCAGa---------UGUCGCGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 13189 0.68 0.732509
Target:  5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3'
miRNA:   3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 52142 0.66 0.869063
Target:  5'- gGCCCCACCagGUCgaaGCcGCuGCCgUUGGc -3'
miRNA:   3'- aCGGGGUGG--CAGa--UGuCG-CGGaAGCC- -5'
28830 3' -58.3 NC_006146.1 + 95508 0.66 0.830651
Target:  5'- gGCCUCcauauccgggaGCUGUCgggUGCGGCGCCUggccaGGg -3'
miRNA:   3'- aCGGGG-----------UGGCAG---AUGUCGCGGAag---CC- -5'
28830 3' -58.3 NC_006146.1 + 156912 0.68 0.760732
Target:  5'- aGCCCgGCCGaggcCUgggugGCGGCGCUgaCGGg -3'
miRNA:   3'- aCGGGgUGGCa---GA-----UGUCGCGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 46069 0.69 0.713268
Target:  5'- gUGCCauaGCUG-CUGCAGgGCCU-CGGg -3'
miRNA:   3'- -ACGGgg-UGGCaGAUGUCgCGGAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 52901 0.67 0.82243
Target:  5'- aGCCCCGCaugGUCUGCguGGC-CCccCGGg -3'
miRNA:   3'- aCGGGGUGg--CAGAUG--UCGcGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 43420 0.69 0.683937
Target:  5'- -cCCCCGCCGUCUccucguccauCAGUaGCCUgCGGg -3'
miRNA:   3'- acGGGGUGGCAGAu---------GUCG-CGGAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 98437 0.69 0.683937
Target:  5'- cGCCCagaACCGguuuCGGCGCCgccCGGg -3'
miRNA:   3'- aCGGGg--UGGCagauGUCGCGGaa-GCC- -5'
28830 3' -58.3 NC_006146.1 + 95201 0.67 0.779022
Target:  5'- gGUCCCugCG-CUGCAGCuCCUccaGGg -3'
miRNA:   3'- aCGGGGugGCaGAUGUCGcGGAag-CC- -5'
28830 3' -58.3 NC_006146.1 + 1982 0.66 0.861019
Target:  5'- gGCCCCcUCGUCUccagaaccugcugACAGuCGCgCUgCGGg -3'
miRNA:   3'- aCGGGGuGGCAGA-------------UGUC-GCG-GAaGCC- -5'
28830 3' -58.3 NC_006146.1 + 25501 0.68 0.732509
Target:  5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3'
miRNA:   3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 16267 0.68 0.732509
Target:  5'- cUGCCCgGCC-UCgcuccgGGCGCCUccUCGGg -3'
miRNA:   3'- -ACGGGgUGGcAGaug---UCGCGGA--AGCC- -5'
28830 3' -58.3 NC_006146.1 + 42916 0.67 0.796815
Target:  5'- cUGUCCCgGCUGUCagcaGCGGCGCCaagcucCGGa -3'
miRNA:   3'- -ACGGGG-UGGCAGa---UGUCGCGGaa----GCC- -5'
28830 3' -58.3 NC_006146.1 + 156234 0.66 0.830651
Target:  5'- gGCCCCcucgGCCGUggACggGGUGCCguggUUGGg -3'
miRNA:   3'- aCGGGG----UGGCAgaUG--UCGCGGa---AGCC- -5'
28830 3' -58.3 NC_006146.1 + 20795 0.67 0.787985
Target:  5'- gUGCaaCGCCGUCUACGGCuucacuggggugGCCaaCGGc -3'
miRNA:   3'- -ACGggGUGGCAGAUGUCG------------CGGaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 137475 0.67 0.796815
Target:  5'- aGCCCCaggACCGagcgGCGGCGCag-CGGu -3'
miRNA:   3'- aCGGGG---UGGCaga-UGUCGCGgaaGCC- -5'
28830 3' -58.3 NC_006146.1 + 2658 0.72 0.516715
Target:  5'- cGCCCCGCCGgccccccCUGCAGgCGCCg---- -3'
miRNA:   3'- aCGGGGUGGCa------GAUGUC-GCGGaagcc -5'
28830 3' -58.3 NC_006146.1 + 161009 0.7 0.614448
Target:  5'- aGCCCCauGCCGUgUGCAuGCGuaCCUgaagCGGg -3'
miRNA:   3'- aCGGGG--UGGCAgAUGU-CGC--GGAa---GCC- -5'
28830 3' -58.3 NC_006146.1 + 3590 0.72 0.516715
Target:  5'- cGCCCCGCCGgccccccCUGCAGgCGCCg---- -3'
miRNA:   3'- aCGGGGUGGCa------GAUGUC-GCGGaagcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.