Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28830 | 3' | -58.3 | NC_006146.1 | + | 127410 | 0.68 | 0.769935 |
Target: 5'- gGCCCCGCCGccggagccggugUCaACGGCcGCCga-GGa -3' miRNA: 3'- aCGGGGUGGC------------AGaUGUCG-CGGaagCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 137597 | 0.67 | 0.796815 |
Target: 5'- aGCCCCaggACCGagcgGCGGCGCag-CGGu -3' miRNA: 3'- aCGGGG---UGGCaga-UGUCGCGgaaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 137475 | 0.67 | 0.796815 |
Target: 5'- aGCCCCaggACCGagcgGCGGCGCag-CGGu -3' miRNA: 3'- aCGGGG---UGGCaga-UGUCGCGgaaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 20795 | 0.67 | 0.787985 |
Target: 5'- gUGCaaCGCCGUCUACGGCuucacuggggugGCCaaCGGc -3' miRNA: 3'- -ACGggGUGGCAGAUGUCG------------CGGaaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 154976 | 0.67 | 0.779023 |
Target: 5'- aGCCUCGCCca----GGCGCCUccUCGGg -3' miRNA: 3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 151898 | 0.67 | 0.779023 |
Target: 5'- aGCCUCGCCca----GGCGCCUccUCGGg -3' miRNA: 3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 148820 | 0.67 | 0.779023 |
Target: 5'- aGCCUCGCCca----GGCGCCUccUCGGg -3' miRNA: 3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 145742 | 0.67 | 0.779023 |
Target: 5'- aGCCUCGCCca----GGCGCCUccUCGGg -3' miRNA: 3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 142665 | 0.67 | 0.779023 |
Target: 5'- aGCCUCGCCca----GGCGCCUccUCGGg -3' miRNA: 3'- aCGGGGUGGcagaugUCGCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 117570 | 0.67 | 0.805505 |
Target: 5'- cGCCCCGCgGcCgcCGG-GCCUccUCGGg -3' miRNA: 3'- aCGGGGUGgCaGauGUCgCGGA--AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 151662 | 0.67 | 0.805505 |
Target: 5'- cGaCCCUgggguCUGUCUgggggacugaggGCGGCGCCUUgGGg -3' miRNA: 3'- aC-GGGGu----GGCAGA------------UGUCGCGGAAgCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 162657 | 0.67 | 0.805505 |
Target: 5'- aUGCCCCcUCGUagGCAGUGCUUcaCGGg -3' miRNA: 3'- -ACGGGGuGGCAgaUGUCGCGGAa-GCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 41042 | 0.66 | 0.868342 |
Target: 5'- -cCCCC-CCGUCcGCGGCGgcCCUgggggccUCGGg -3' miRNA: 3'- acGGGGuGGCAGaUGUCGC--GGA-------AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 106465 | 0.66 | 0.861761 |
Target: 5'- aGCCCCuCUGUCUccugGCAGCguacGCCgccgUGGc -3' miRNA: 3'- aCGGGGuGGCAGA----UGUCG----CGGaa--GCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 47505 | 0.66 | 0.861761 |
Target: 5'- -aCCCCaagGCCGgggaCUACAGCGgCagugUCGGg -3' miRNA: 3'- acGGGG---UGGCa---GAUGUCGCgGa---AGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 39687 | 0.66 | 0.854262 |
Target: 5'- gGCUCCuggGcCUGCAGCGCCgcucCGGa -3' miRNA: 3'- aCGGGGuggCaGAUGUCGCGGaa--GCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 123819 | 0.66 | 0.846574 |
Target: 5'- cGCagCCCACCGUCUucgucaGGCGCCcccUCa- -3' miRNA: 3'- aCG--GGGUGGCAGAug----UCGCGGa--AGcc -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 42733 | 0.66 | 0.846574 |
Target: 5'- cGCCUC-CCGgcgucgCUGCAuCGCCUgCGGc -3' miRNA: 3'- aCGGGGuGGCa-----GAUGUcGCGGAaGCC- -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 54565 | 0.66 | 0.841872 |
Target: 5'- cGCCCCACCGUggGCAugaucagggaccucuGUGCCUc--- -3' miRNA: 3'- aCGGGGUGGCAgaUGU---------------CGCGGAagcc -5' |
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28830 | 3' | -58.3 | NC_006146.1 | + | 43813 | 0.66 | 0.830651 |
Target: 5'- cUGUCCCACCGcUCcGCccuGGCcCUUUCGGc -3' miRNA: 3'- -ACGGGGUGGC-AGaUG---UCGcGGAAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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