miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28830 5' -52.2 NC_006146.1 + 2456 0.66 0.983369
Target:  5'- cCGUCAacgaGUGGGUcuuuggcgGUGugGCCGgCGGGg -3'
miRNA:   3'- -GCGGUg---UAUUUA--------UACugCGGC-GCCCa -5'
28830 5' -52.2 NC_006146.1 + 15766 0.71 0.874335
Target:  5'- cCGCUGCugc-----GACGCCGCGGGg -3'
miRNA:   3'- -GCGGUGuauuuauaCUGCGGCGCCCa -5'
28830 5' -52.2 NC_006146.1 + 18858 0.66 0.986905
Target:  5'- gCGCUGCcgGGGUGgugGACG-UGCGGGg -3'
miRNA:   3'- -GCGGUGuaUUUAUa--CUGCgGCGCCCa -5'
28830 5' -52.2 NC_006146.1 + 20854 0.66 0.983369
Target:  5'- uCGCCGa--GAccGUGACGCUGCaGGGg -3'
miRNA:   3'- -GCGGUguaUUuaUACUGCGGCG-CCCa -5'
28830 5' -52.2 NC_006146.1 + 33579 0.7 0.898132
Target:  5'- uCGCCGCGUucgcugguccgguuuGGGUGggcGugGuCCGCGGGUu -3'
miRNA:   3'- -GCGGUGUA---------------UUUAUa--CugC-GGCGCCCA- -5'
28830 5' -52.2 NC_006146.1 + 44732 0.73 0.799499
Target:  5'- gGCCugAUGcg---GugGCCGCGGGc -3'
miRNA:   3'- gCGGugUAUuuauaCugCGGCGCCCa -5'
28830 5' -52.2 NC_006146.1 + 50570 0.67 0.98135
Target:  5'- gGCCACA-AAGUuguUGAUgaGCCGgGGGa -3'
miRNA:   3'- gCGGUGUaUUUAu--ACUG--CGGCgCCCa -5'
28830 5' -52.2 NC_006146.1 + 51167 0.66 0.986905
Target:  5'- gCGCCGCuGUGGGUGUGGaaggggGuCUGCGGGc -3'
miRNA:   3'- -GCGGUG-UAUUUAUACUg-----C-GGCGCCCa -5'
28830 5' -52.2 NC_006146.1 + 51553 0.7 0.908379
Target:  5'- cCGCCguACGUGAugacccugGGCGCCGcCGGGa -3'
miRNA:   3'- -GCGG--UGUAUUuaua----CUGCGGC-GCCCa -5'
28830 5' -52.2 NC_006146.1 + 51956 0.66 0.985217
Target:  5'- gCGCCAac------UGGCGCCGaCGGGg -3'
miRNA:   3'- -GCGGUguauuuauACUGCGGC-GCCCa -5'
28830 5' -52.2 NC_006146.1 + 53008 0.66 0.985217
Target:  5'- gGCCGCGgGGGUcgAUGACcaGCCuCGGGUg -3'
miRNA:   3'- gCGGUGUaUUUA--UACUG--CGGcGCCCA- -5'
28830 5' -52.2 NC_006146.1 + 53524 0.68 0.95015
Target:  5'- gGCCGCGc--GUGUGAagGCCGCGaGGa -3'
miRNA:   3'- gCGGUGUauuUAUACUg-CGGCGC-CCa -5'
28830 5' -52.2 NC_006146.1 + 54472 0.68 0.958153
Target:  5'- gCGUC-CAUGAuccucaggAUGGCGUCGUGGGa -3'
miRNA:   3'- -GCGGuGUAUUua------UACUGCGGCGCCCa -5'
28830 5' -52.2 NC_006146.1 + 54842 0.67 0.979154
Target:  5'- uCGCCACAUuuGUcAUG-CGCCauccccagcaGCGGGc -3'
miRNA:   3'- -GCGGUGUAuuUA-UACuGCGG----------CGCCCa -5'
28830 5' -52.2 NC_006146.1 + 55367 0.67 0.970543
Target:  5'- cCGCCACcgcgcgcggGACGCC-CGGGg -3'
miRNA:   3'- -GCGGUGuauuuaua-CUGCGGcGCCCa -5'
28830 5' -52.2 NC_006146.1 + 56388 0.68 0.96843
Target:  5'- cCGCCGgGUAAGcGUGGcCGCuCGCGaGGg -3'
miRNA:   3'- -GCGGUgUAUUUaUACU-GCG-GCGC-CCa -5'
28830 5' -52.2 NC_006146.1 + 57370 0.67 0.974195
Target:  5'- gGCUGCGgcg--GUGGCGCCgGUGGGc -3'
miRNA:   3'- gCGGUGUauuuaUACUGCGG-CGCCCa -5'
28830 5' -52.2 NC_006146.1 + 60468 0.67 0.976772
Target:  5'- gGCCGCGgggAGcgGUGAgagGCCGgGGGg -3'
miRNA:   3'- gCGGUGUa--UUuaUACUg--CGGCgCCCa -5'
28830 5' -52.2 NC_006146.1 + 66148 0.66 0.985217
Target:  5'- aCGCCACcgucAAGcucUAUGACGCCGUGa-- -3'
miRNA:   3'- -GCGGUGua--UUU---AUACUGCGGCGCcca -5'
28830 5' -52.2 NC_006146.1 + 69453 0.72 0.834693
Target:  5'- gGCCACGUug--AUGGCGaCCGUGGuGUg -3'
miRNA:   3'- gCGGUGUAuuuaUACUGC-GGCGCC-CA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.