miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28831 3' -56.2 NC_006146.1 + 102925 0.66 0.911445
Target:  5'- gCGCCccaagauCGUGGGCUGCCUgCGCaGCAu -3'
miRNA:   3'- -GUGGuc-----GCACUCGACGGAaGUGgUGU- -5'
28831 3' -56.2 NC_006146.1 + 115365 0.66 0.910845
Target:  5'- gGCCGGCGUggcggcgGAGCUggagGCCcUgGCCGCu -3'
miRNA:   3'- gUGGUCGCA-------CUCGA----CGGaAgUGGUGu -5'
28831 3' -56.2 NC_006146.1 + 58851 0.66 0.89898
Target:  5'- aACCAcCGcUGAGCUGCCcacccCACCugAc -3'
miRNA:   3'- gUGGUcGC-ACUCGACGGaa---GUGGugU- -5'
28831 3' -56.2 NC_006146.1 + 69933 0.66 0.892396
Target:  5'- gACCAGgGUGAGCcGCCccgCGCUg-- -3'
miRNA:   3'- gUGGUCgCACUCGaCGGaa-GUGGugu -5'
28831 3' -56.2 NC_006146.1 + 41323 0.66 0.892396
Target:  5'- -uUCAGaggGAGCUGucCCUUCACCACc -3'
miRNA:   3'- guGGUCgcaCUCGAC--GGAAGUGGUGu -5'
28831 3' -56.2 NC_006146.1 + 160203 0.66 0.885581
Target:  5'- uCGCCAGUcUGuGCUGCCUgCAugaugcCCGCGg -3'
miRNA:   3'- -GUGGUCGcACuCGACGGAaGU------GGUGU- -5'
28831 3' -56.2 NC_006146.1 + 152541 0.66 0.878541
Target:  5'- gACCAGgGUGAGCaUGCC---ACCAa- -3'
miRNA:   3'- gUGGUCgCACUCG-ACGGaagUGGUgu -5'
28831 3' -56.2 NC_006146.1 + 100283 0.67 0.848221
Target:  5'- -cCUAGCGgGGGCUggcagGCCUgCACCGCGa -3'
miRNA:   3'- guGGUCGCaCUCGA-----CGGAaGUGGUGU- -5'
28831 3' -56.2 NC_006146.1 + 96703 0.67 0.848221
Target:  5'- aCACCGGUGUGuGGUUaGCCa-CACCAUAu -3'
miRNA:   3'- -GUGGUCGCAC-UCGA-CGGaaGUGGUGU- -5'
28831 3' -56.2 NC_006146.1 + 124171 0.67 0.840131
Target:  5'- gGCCAGCGUGGccuccGCccGCCUcggagcCGCCGCGg -3'
miRNA:   3'- gUGGUCGCACU-----CGa-CGGAa-----GUGGUGU- -5'
28831 3' -56.2 NC_006146.1 + 137676 0.67 0.831851
Target:  5'- cCGCCGGCGgccacccGGCUGCCccggagCACCAgGa -3'
miRNA:   3'- -GUGGUCGCac-----UCGACGGaa----GUGGUgU- -5'
28831 3' -56.2 NC_006146.1 + 3684 0.68 0.823387
Target:  5'- -cCCAGCGUGGGgaGCaaagagCACCugGu -3'
miRNA:   3'- guGGUCGCACUCgaCGgaa---GUGGugU- -5'
28831 3' -56.2 NC_006146.1 + 60903 0.68 0.814748
Target:  5'- -cCCAGUGgauccagGAGCUGUUUcgCACCGCGg -3'
miRNA:   3'- guGGUCGCa------CUCGACGGAa-GUGGUGU- -5'
28831 3' -56.2 NC_006146.1 + 57935 0.68 0.814748
Target:  5'- gGCCGGCGccgccaUGGuGCUGCa-UCACCACu -3'
miRNA:   3'- gUGGUCGC------ACU-CGACGgaAGUGGUGu -5'
28831 3' -56.2 NC_006146.1 + 77355 0.68 0.814748
Target:  5'- gGCCGGCuucGUGuGCUGCCUggaaCACAa -3'
miRNA:   3'- gUGGUCG---CACuCGACGGAagugGUGU- -5'
28831 3' -56.2 NC_006146.1 + 68115 0.68 0.814748
Target:  5'- gGCCAGCcgguccgcgGUGAGCggcGCCa-CGCCACGc -3'
miRNA:   3'- gUGGUCG---------CACUCGa--CGGaaGUGGUGU- -5'
28831 3' -56.2 NC_006146.1 + 47004 0.69 0.779539
Target:  5'- uCACCAGCGUccaGAGCggagacuacucucugGUCauagUCACCACGu -3'
miRNA:   3'- -GUGGUCGCA---CUCGa--------------CGGa---AGUGGUGU- -5'
28831 3' -56.2 NC_006146.1 + 167293 0.69 0.778607
Target:  5'- gGCCGGCGgGAGggGCCggCGCCuGCAg -3'
miRNA:   3'- gUGGUCGCaCUCgaCGGaaGUGG-UGU- -5'
28831 3' -56.2 NC_006146.1 + 168225 0.69 0.778607
Target:  5'- gGCCGGCGgGAGggGCCggCGCCuGCAg -3'
miRNA:   3'- gUGGUCGCaCUCgaCGGaaGUGG-UGU- -5'
28831 3' -56.2 NC_006146.1 + 169157 0.69 0.778607
Target:  5'- gGCCGGCGgGAGggGCCggCGCCuGCAg -3'
miRNA:   3'- gUGGUCGCaCUCgaCGGaaGUGG-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.