Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28831 | 3' | -56.2 | NC_006146.1 | + | 68115 | 0.68 | 0.814748 |
Target: 5'- gGCCAGCcgguccgcgGUGAGCggcGCCa-CGCCACGc -3' miRNA: 3'- gUGGUCG---------CACUCGa--CGGaaGUGGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 168225 | 0.69 | 0.778607 |
Target: 5'- gGCCGGCGgGAGggGCCggCGCCuGCAg -3' miRNA: 3'- gUGGUCGCaCUCgaCGGaaGUGG-UGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 167293 | 0.69 | 0.778607 |
Target: 5'- gGCCGGCGgGAGggGCCggCGCCuGCAg -3' miRNA: 3'- gUGGUCGCaCUCgaCGGaaGUGG-UGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 38680 | 0.69 | 0.759708 |
Target: 5'- gGCC-GCGaGAGCUGCCUUaaagGCCugGa -3' miRNA: 3'- gUGGuCGCaCUCGACGGAAg---UGGugU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 146835 | 0.72 | 0.588073 |
Target: 5'- gCGCCAGCGUaGAGCccggGCCUggcUCgggGCCGCGu -3' miRNA: 3'- -GUGGUCGCA-CUCGa---CGGA---AG---UGGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 170089 | 0.75 | 0.406482 |
Target: 5'- gGCCGGCGgGAGggGCCggCGCCGCAg -3' miRNA: 3'- gUGGUCGCaCUCgaCGGaaGUGGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 169157 | 0.69 | 0.778607 |
Target: 5'- gGCCGGCGgGAGggGCCggCGCCuGCAg -3' miRNA: 3'- gUGGUCGCaCUCgaCGGaaGUGG-UGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 69933 | 0.66 | 0.892396 |
Target: 5'- gACCAGgGUGAGCcGCCccgCGCUg-- -3' miRNA: 3'- gUGGUCgCACUCGaCGGaa-GUGGugu -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 152541 | 0.66 | 0.878541 |
Target: 5'- gACCAGgGUGAGCaUGCC---ACCAa- -3' miRNA: 3'- gUGGUCgCACUCG-ACGGaagUGGUgu -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 100283 | 0.67 | 0.848221 |
Target: 5'- -cCUAGCGgGGGCUggcagGCCUgCACCGCGa -3' miRNA: 3'- guGGUCGCaCUCGA-----CGGAaGUGGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 60903 | 0.68 | 0.814748 |
Target: 5'- -cCCAGUGgauccagGAGCUGUUUcgCACCGCGg -3' miRNA: 3'- guGGUCGCa------CUCGACGGAa-GUGGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 3684 | 0.68 | 0.823387 |
Target: 5'- -cCCAGCGUGGGgaGCaaagagCACCugGu -3' miRNA: 3'- guGGUCGCACUCgaCGgaa---GUGGugU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 160203 | 0.66 | 0.885581 |
Target: 5'- uCGCCAGUcUGuGCUGCCUgCAugaugcCCGCGg -3' miRNA: 3'- -GUGGUCGcACuCGACGGAaGU------GGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 58851 | 0.66 | 0.89898 |
Target: 5'- aACCAcCGcUGAGCUGCCcacccCACCugAc -3' miRNA: 3'- gUGGUcGC-ACUCGACGGaa---GUGGugU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 124171 | 0.67 | 0.840131 |
Target: 5'- gGCCAGCGUGGccuccGCccGCCUcggagcCGCCGCGg -3' miRNA: 3'- gUGGUCGCACU-----CGa-CGGAa-----GUGGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 75511 | 1.08 | 0.003229 |
Target: 5'- gCACCAGCGUGAGCUGCCUUCACCACAc -3' miRNA: 3'- -GUGGUCGCACUCGACGGAAGUGGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 115125 | 0.71 | 0.617772 |
Target: 5'- gGCCAGCGUGGuggccucGCUGCCccuggccCGCCGCc -3' miRNA: 3'- gUGGUCGCACU-------CGACGGaa-----GUGGUGu -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 101840 | 0.71 | 0.659869 |
Target: 5'- gGCCcgAGCGcucGGGCUGCCg-CACCACGg -3' miRNA: 3'- gUGG--UCGCa--CUCGACGGaaGUGGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 137799 | 0.7 | 0.680302 |
Target: 5'- cCGCCGGCGgccacccGGCUGCCccagaGCCGCAg -3' miRNA: 3'- -GUGGUCGCac-----UCGACGGaag--UGGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 137676 | 0.67 | 0.831851 |
Target: 5'- cCGCCGGCGgccacccGGCUGCCccggagCACCAgGa -3' miRNA: 3'- -GUGGUCGCac-----UCGACGGaa----GUGGUgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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