Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28831 | 3' | -56.2 | NC_006146.1 | + | 137676 | 0.67 | 0.831851 |
Target: 5'- cCGCCGGCGgccacccGGCUGCCccggagCACCAgGa -3' miRNA: 3'- -GUGGUCGCac-----UCGACGGaa----GUGGUgU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 77355 | 0.68 | 0.814748 |
Target: 5'- gGCCGGCuucGUGuGCUGCCUggaaCACAa -3' miRNA: 3'- gUGGUCG---CACuCGACGGAagugGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 57935 | 0.68 | 0.814748 |
Target: 5'- gGCCGGCGccgccaUGGuGCUGCa-UCACCACu -3' miRNA: 3'- gUGGUCGC------ACU-CGACGgaAGUGGUGu -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 47004 | 0.69 | 0.779539 |
Target: 5'- uCACCAGCGUccaGAGCggagacuacucucugGUCauagUCACCACGu -3' miRNA: 3'- -GUGGUCGCA---CUCGa--------------CGGa---AGUGGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 126196 | 0.7 | 0.700576 |
Target: 5'- gGCCAGCGgGGGCcacgGCCaccgcCGCCACAc -3' miRNA: 3'- gUGGUCGCaCUCGa---CGGaa---GUGGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 137799 | 0.7 | 0.680302 |
Target: 5'- cCGCCGGCGgccacccGGCUGCCccagaGCCGCAg -3' miRNA: 3'- -GUGGUCGCac-----UCGACGGaag--UGGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 101840 | 0.71 | 0.659869 |
Target: 5'- gGCCcgAGCGcucGGGCUGCCg-CACCACGg -3' miRNA: 3'- gUGG--UCGCa--CUCGACGGaaGUGGUGU- -5' |
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28831 | 3' | -56.2 | NC_006146.1 | + | 102925 | 0.66 | 0.911445 |
Target: 5'- gCGCCccaagauCGUGGGCUGCCUgCGCaGCAu -3' miRNA: 3'- -GUGGuc-----GCACUCGACGGAaGUGgUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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