miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28831 5' -58.8 NC_006146.1 + 53047 0.65 0.833333
Target:  5'- cGCCgagaGGUAAgGGGGGCggguggggaacacCGCcACCGc -3'
miRNA:   3'- aCGGa---CCAUUgCCCCCG-------------GUGuUGGCa -5'
28831 5' -58.8 NC_006146.1 + 55276 0.66 0.825945
Target:  5'- gGCUcgUGGggcucGCGGuGGGCaGCAGCCGg -3'
miRNA:   3'- aCGG--ACCau---UGCC-CCCGgUGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 33271 0.66 0.825945
Target:  5'- cGCUccgGGUGGgGGGuGGCC-CGGCUGg -3'
miRNA:   3'- aCGGa--CCAUUgCCC-CCGGuGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 33147 0.66 0.825945
Target:  5'- cGCUccgGGUGGgGGGuGGCC-CGGCUGg -3'
miRNA:   3'- aCGGa--CCAUUgCCC-CCGGuGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 99162 0.66 0.825945
Target:  5'- gGCa-GGUGGCGGaGGGCCA--GCuCGUa -3'
miRNA:   3'- aCGgaCCAUUGCC-CCCGGUguUG-GCA- -5'
28831 5' -58.8 NC_006146.1 + 47527 0.66 0.825945
Target:  5'- aGCCaGGUuGCGGGGcCCcCGGCCa- -3'
miRNA:   3'- aCGGaCCAuUGCCCCcGGuGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 54878 0.66 0.825945
Target:  5'- gGCUgcggGcGUAGCGGGGuCCGCucgcGCCGUc -3'
miRNA:   3'- aCGGa---C-CAUUGCCCCcGGUGu---UGGCA- -5'
28831 5' -58.8 NC_006146.1 + 150707 0.66 0.825944
Target:  5'- gGCCUGGccuGCGGGGGacaggguggaCGgGGCUGg -3'
miRNA:   3'- aCGGACCau-UGCCCCCg---------GUgUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 120577 0.66 0.825115
Target:  5'- aGCCUGGUcagagagaacaggAGCGGGGucuUCugGACCa- -3'
miRNA:   3'- aCGGACCA-------------UUGCCCCc--GGugUUGGca -5'
28831 5' -58.8 NC_006146.1 + 108070 0.66 0.820943
Target:  5'- gGCCUGGccACGGcGGCCAgGguuccauugauguacACCGUc -3'
miRNA:   3'- aCGGACCauUGCCcCCGGUgU---------------UGGCA- -5'
28831 5' -58.8 NC_006146.1 + 22092 0.66 0.817576
Target:  5'- cGCCUGGgcgaGGCuGGGuGGCUggGCAgGCCGg -3'
miRNA:   3'- aCGGACCa---UUG-CCC-CCGG--UGU-UGGCa -5'
28831 5' -58.8 NC_006146.1 + 28248 0.66 0.817576
Target:  5'- cGCCUGGgcgaGGCuGGGuGGCUggGCAgGCCGg -3'
miRNA:   3'- aCGGACCa---UUG-CCC-CCGG--UGU-UGGCa -5'
28831 5' -58.8 NC_006146.1 + 15937 0.66 0.817576
Target:  5'- cGCCUGGgcgaGGCuGGGuGGCUggGCAgGCCGg -3'
miRNA:   3'- aCGGACCa---UUG-CCC-CCGG--UGU-UGGCa -5'
28831 5' -58.8 NC_006146.1 + 25170 0.66 0.817576
Target:  5'- cGCCUGGgcgaGGCuGGGuGGCUggGCAgGCCGg -3'
miRNA:   3'- aCGGACCa---UUG-CCC-CCGG--UGU-UGGCa -5'
28831 5' -58.8 NC_006146.1 + 124226 0.66 0.817576
Target:  5'- -uCCUGGUccGACGuGGaGGCCAacGCCGg -3'
miRNA:   3'- acGGACCA--UUGC-CC-CCGGUguUGGCa -5'
28831 5' -58.8 NC_006146.1 + 103687 0.66 0.817576
Target:  5'- gUGCCUGGccggccaGGCGaccGGCCACGGCCa- -3'
miRNA:   3'- -ACGGACCa------UUGCcc-CCGGUGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 14844 0.66 0.817576
Target:  5'- gGCCcgGGgccGCGGGaGGCCgaggggGCAGCCa- -3'
miRNA:   3'- aCGGa-CCau-UGCCC-CCGG------UGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 143711 0.66 0.817576
Target:  5'- aGCCUGGggccuCGGaGGGCCugGaggGCUa- -3'
miRNA:   3'- aCGGACCauu--GCC-CCCGGugU---UGGca -5'
28831 5' -58.8 NC_006146.1 + 110571 0.66 0.817576
Target:  5'- aGCCgcaaaccagcGGUuGCGGuGGGUCuCGACCGUc -3'
miRNA:   3'- aCGGa---------CCAuUGCC-CCCGGuGUUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 19014 0.66 0.817576
Target:  5'- cGCCUGGgcgaGGCuGGGuGGCUggGCAgGCCGg -3'
miRNA:   3'- aCGGACCa---UUG-CCC-CCGG--UGU-UGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.