miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28831 5' -58.8 NC_006146.1 + 53047 0.65 0.833333
Target:  5'- cGCCgagaGGUAAgGGGGGCggguggggaacacCGCcACCGc -3'
miRNA:   3'- aCGGa---CCAUUgCCCCCG-------------GUGuUGGCa -5'
28831 5' -58.8 NC_006146.1 + 137240 0.66 0.809046
Target:  5'- gGCCUGGgguccCGGGGaCCACAcCCc- -3'
miRNA:   3'- aCGGACCauu--GCCCCcGGUGUuGGca -5'
28831 5' -58.8 NC_006146.1 + 137053 0.66 0.809046
Target:  5'- gGCCUGGgguucCGGGGaCCACAcCCc- -3'
miRNA:   3'- aCGGACCauu--GCCCCcGGUGUuGGca -5'
28831 5' -58.8 NC_006146.1 + 128976 0.66 0.809046
Target:  5'- gGCCUcgGGUucugccucagcaAGgGGGGGUCGCAGCUa- -3'
miRNA:   3'- aCGGA--CCA------------UUgCCCCCGGUGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 83771 0.66 0.809046
Target:  5'- gGCCUGGU---GGGaGGUCGCAGUCGa -3'
miRNA:   3'- aCGGACCAuugCCC-CCGGUGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 24097 0.66 0.800362
Target:  5'- cGCCUGGgacGCGGgucgaGGGCgGCuggcACCGg -3'
miRNA:   3'- aCGGACCau-UGCC-----CCCGgUGu---UGGCa -5'
28831 5' -58.8 NC_006146.1 + 122751 0.66 0.791532
Target:  5'- gGCCccuacgaggGGUAcgaGCGGGGGCU--GGCCGa -3'
miRNA:   3'- aCGGa--------CCAU---UGCCCCCGGugUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 52868 0.66 0.790641
Target:  5'- cGCCuccuuugUGGUu-CGGGGGgagaacuggUCACGGCCGUg -3'
miRNA:   3'- aCGG-------ACCAuuGCCCCC---------GGUGUUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 44732 0.66 0.791532
Target:  5'- gGCCUGau-GCGGuGGCCGCGGgCGg -3'
miRNA:   3'- aCGGACcauUGCCcCCGGUGUUgGCa -5'
28831 5' -58.8 NC_006146.1 + 141457 0.66 0.809046
Target:  5'- gGCCaGGgagGACGGaGGGCCugG-CCu- -3'
miRNA:   3'- aCGGaCCa--UUGCC-CCCGGugUuGGca -5'
28831 5' -58.8 NC_006146.1 + 144535 0.66 0.809046
Target:  5'- gGCCaGGgagGACGGaGGGCCugG-CCu- -3'
miRNA:   3'- aCGGaCCa--UUGCC-CCCGGugUuGGca -5'
28831 5' -58.8 NC_006146.1 + 147613 0.66 0.809046
Target:  5'- gGCCaGGgagGACGGaGGGCCugG-CCu- -3'
miRNA:   3'- aCGGaCCa--UUGCC-CCCGGugUuGGca -5'
28831 5' -58.8 NC_006146.1 + 124226 0.66 0.817576
Target:  5'- -uCCUGGUccGACGuGGaGGCCAacGCCGg -3'
miRNA:   3'- acGGACCA--UUGC-CC-CCGGUguUGGCa -5'
28831 5' -58.8 NC_006146.1 + 103687 0.66 0.817576
Target:  5'- gUGCCUGGccggccaGGCGaccGGCCACGGCCa- -3'
miRNA:   3'- -ACGGACCa------UUGCcc-CCGGUGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 14844 0.66 0.817576
Target:  5'- gGCCcgGGgccGCGGGaGGCCgaggggGCAGCCa- -3'
miRNA:   3'- aCGGa-CCau-UGCCC-CCGG------UGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 143711 0.66 0.817576
Target:  5'- aGCCUGGggccuCGGaGGGCCugGaggGCUa- -3'
miRNA:   3'- aCGGACCauu--GCC-CCCGGugU---UGGca -5'
28831 5' -58.8 NC_006146.1 + 110571 0.66 0.817576
Target:  5'- aGCCgcaaaccagcGGUuGCGGuGGGUCuCGACCGUc -3'
miRNA:   3'- aCGGa---------CCAuUGCC-CCCGGuGUUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 167093 0.66 0.81673
Target:  5'- cGCCUGGccugacccagaccUGACuGuGGGCCACAAaggCGUa -3'
miRNA:   3'- aCGGACC-------------AUUGcC-CCCGGUGUUg--GCA- -5'
28831 5' -58.8 NC_006146.1 + 156846 0.66 0.809046
Target:  5'- gGCCaGGgagGACGGaGGGCCugG-CCu- -3'
miRNA:   3'- aCGGaCCa--UUGCC-CCCGGugUuGGca -5'
28831 5' -58.8 NC_006146.1 + 153768 0.66 0.809046
Target:  5'- gGCCaGGgagGACGGaGGGCCugG-CCu- -3'
miRNA:   3'- aCGGaCCa--UUGCC-CCCGGugUuGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.