miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28831 5' -58.8 NC_006146.1 + 75545 1.07 0.002214
Target:  5'- cUGCCUGGUAACGGGGGCCACAACCGUg -3'
miRNA:   3'- -ACGGACCAUUGCCCCCGGUGUUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 126192 0.8 0.166793
Target:  5'- gGCC-GGccAGCGGGGGCCACGGCCa- -3'
miRNA:   3'- aCGGaCCa-UUGCCCCCGGUGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 161776 0.79 0.193342
Target:  5'- cGCCUGG--GCGGGGGCCugAAUCu- -3'
miRNA:   3'- aCGGACCauUGCCCCCGGugUUGGca -5'
28831 5' -58.8 NC_006146.1 + 162039 0.77 0.24006
Target:  5'- aGCCUGGggGCGGGGGCa--GGCUGUu -3'
miRNA:   3'- aCGGACCauUGCCCCCGgugUUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 10465 0.76 0.276194
Target:  5'- cGCCUucGUGAUGGGGGCCACcGCCc- -3'
miRNA:   3'- aCGGAc-CAUUGCCCCCGGUGuUGGca -5'
28831 5' -58.8 NC_006146.1 + 76910 0.76 0.302619
Target:  5'- aGCCagaGGUGAcCGcGGGGCUGCAGCCGg -3'
miRNA:   3'- aCGGa--CCAUU-GC-CCCCGGUGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 115548 0.75 0.316544
Target:  5'- cGCgC-GGUGGCGGGGGCUggagGCGACCGc -3'
miRNA:   3'- aCG-GaCCAUUGCCCCCGG----UGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 18861 0.75 0.330948
Target:  5'- cUGCCggGGUGguggacguGCGGGGGCCuCAGCCc- -3'
miRNA:   3'- -ACGGa-CCAU--------UGCCCCCGGuGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 44301 0.73 0.401596
Target:  5'- cGCCaaaccGGUAGUGGGGGCUGgGGCCGUg -3'
miRNA:   3'- aCGGa----CCAUUGCCCCCGGUgUUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 149796 0.73 0.409171
Target:  5'- gGCCUccagGGaGAUGGGGGCCACAAacaggcuCCGg -3'
miRNA:   3'- aCGGA----CCaUUGCCCCCGGUGUU-------GGCa -5'
28831 5' -58.8 NC_006146.1 + 3842 0.73 0.427185
Target:  5'- aGCCggcgGGUAAgGGGGGUCGCccugGACCa- -3'
miRNA:   3'- aCGGa---CCAUUgCCCCCGGUG----UUGGca -5'
28831 5' -58.8 NC_006146.1 + 56842 0.73 0.427185
Target:  5'- gGCCucUGGcGGCGGGGGCgGCAGCUu- -3'
miRNA:   3'- aCGG--ACCaUUGCCCCCGgUGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 51644 0.72 0.471891
Target:  5'- gGCuCUGGacucccaGGGGGCCAgGGCCGg -3'
miRNA:   3'- aCG-GACCauug---CCCCCGGUgUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 154660 0.72 0.490427
Target:  5'- cGCCggcugcaccgUGGUGGCGGGGGgCGCugcuGCUGg -3'
miRNA:   3'- aCGG----------ACCAUUGCCCCCgGUGu---UGGCa -5'
28831 5' -58.8 NC_006146.1 + 101927 0.71 0.499821
Target:  5'- cGCC-GGUGgccGCGGGGGCgGUGACCGa -3'
miRNA:   3'- aCGGaCCAU---UGCCCCCGgUGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 70269 0.71 0.509295
Target:  5'- aUGgC-GGUGAUGGGGaCCACGGCCGa -3'
miRNA:   3'- -ACgGaCCAUUGCCCCcGGUGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 127488 0.71 0.518843
Target:  5'- gGaCgaGGagacGGCGGGGGUCGCAGCCGg -3'
miRNA:   3'- aC-GgaCCa---UUGCCCCCGGUGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 113703 0.71 0.528461
Target:  5'- gGCCcGGgGACGGcGGCgGCAGCCGg -3'
miRNA:   3'- aCGGaCCaUUGCCcCCGgUGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 40030 0.71 0.528461
Target:  5'- gGCCUGc---UGGGGGCCGUAGCCGa -3'
miRNA:   3'- aCGGACcauuGCCCCCGGUGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 124519 0.71 0.537173
Target:  5'- gGcCCUGGcgaggGACGGGGGCCugGgggagcuGCUGUc -3'
miRNA:   3'- aC-GGACCa----UUGCCCCCGGugU-------UGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.