Results 21 - 40 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28831 | 5' | -58.8 | NC_006146.1 | + | 167093 | 0.66 | 0.81673 |
Target: 5'- cGCCUGGccugacccagaccUGACuGuGGGCCACAAaggCGUa -3' miRNA: 3'- aCGGACC-------------AUUGcC-CCCGGUGUUg--GCA- -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 156846 | 0.66 | 0.809046 |
Target: 5'- gGCCaGGgagGACGGaGGGCCugG-CCu- -3' miRNA: 3'- aCGGaCCa--UUGCC-CCCGGugUuGGca -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 83771 | 0.66 | 0.809046 |
Target: 5'- gGCCUGGU---GGGaGGUCGCAGUCGa -3' miRNA: 3'- aCGGACCAuugCCC-CCGGUGUUGGCa -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 144535 | 0.66 | 0.809046 |
Target: 5'- gGCCaGGgagGACGGaGGGCCugG-CCu- -3' miRNA: 3'- aCGGaCCa--UUGCC-CCCGGugUuGGca -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 147613 | 0.66 | 0.809046 |
Target: 5'- gGCCaGGgagGACGGaGGGCCugG-CCu- -3' miRNA: 3'- aCGGaCCa--UUGCC-CCCGGugUuGGca -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 141457 | 0.66 | 0.809046 |
Target: 5'- gGCCaGGgagGACGGaGGGCCugG-CCu- -3' miRNA: 3'- aCGGaCCa--UUGCC-CCCGGugUuGGca -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 137240 | 0.66 | 0.809046 |
Target: 5'- gGCCUGGgguccCGGGGaCCACAcCCc- -3' miRNA: 3'- aCGGACCauu--GCCCCcGGUGUuGGca -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 137053 | 0.66 | 0.809046 |
Target: 5'- gGCCUGGgguucCGGGGaCCACAcCCc- -3' miRNA: 3'- aCGGACCauu--GCCCCcGGUGUuGGca -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 128976 | 0.66 | 0.809046 |
Target: 5'- gGCCUcgGGUucugccucagcaAGgGGGGGUCGCAGCUa- -3' miRNA: 3'- aCGGA--CCA------------UUgCCCCCGGUGUUGGca -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 153768 | 0.66 | 0.809046 |
Target: 5'- gGCCaGGgagGACGGaGGGCCugG-CCu- -3' miRNA: 3'- aCGGaCCa--UUGCC-CCCGGugUuGGca -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 70152 | 0.66 | 0.800362 |
Target: 5'- cGCCUGGcuccUGGCcGGGGCgCugGugGCCGg -3' miRNA: 3'- aCGGACC----AUUGcCCCCG-GugU--UGGCa -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 24097 | 0.66 | 0.800362 |
Target: 5'- cGCCUGGgacGCGGgucgaGGGCgGCuggcACCGg -3' miRNA: 3'- aCGGACCau-UGCC-----CCCGgUGu---UGGCa -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 44732 | 0.66 | 0.791532 |
Target: 5'- gGCCUGau-GCGGuGGCCGCGGgCGg -3' miRNA: 3'- aCGGACcauUGCCcCCGGUGUUgGCa -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 55028 | 0.66 | 0.791532 |
Target: 5'- gGCg-GGcggGAUGGGGGUCGgGGCCGg -3' miRNA: 3'- aCGgaCCa--UUGCCCCCGGUgUUGGCa -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 59022 | 0.66 | 0.791532 |
Target: 5'- cUGCCUGGUGaacgcaccgcugGCGGuGaGGgCGCAGCgGg -3' miRNA: 3'- -ACGGACCAU------------UGCC-C-CCgGUGUUGgCa -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 122751 | 0.66 | 0.791532 |
Target: 5'- gGCCccuacgaggGGUAcgaGCGGGGGCU--GGCCGa -3' miRNA: 3'- aCGGa--------CCAU---UGCCCCCGGugUUGGCa -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 52868 | 0.66 | 0.790641 |
Target: 5'- cGCCuccuuugUGGUu-CGGGGGgagaacuggUCACGGCCGUg -3' miRNA: 3'- aCGG-------ACCAuuGCCCCC---------GGUGUUGGCA- -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 162329 | 0.67 | 0.782565 |
Target: 5'- cUGCCUGGUGcugcaGCccGGGCUGCAGCUa- -3' miRNA: 3'- -ACGGACCAU-----UGccCCCGGUGUUGGca -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 58432 | 0.67 | 0.782565 |
Target: 5'- cGCCggGGUGGgucUGGGGGUCACAGa-GUa -3' miRNA: 3'- aCGGa-CCAUU---GCCCCCGGUGUUggCA- -5' |
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28831 | 5' | -58.8 | NC_006146.1 | + | 45521 | 0.67 | 0.782565 |
Target: 5'- gGCCacGGU---GGGGGCCugGGCCu- -3' miRNA: 3'- aCGGa-CCAuugCCCCCGGugUUGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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