miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28831 5' -58.8 NC_006146.1 + 49542 0.67 0.782565
Target:  5'- -cUCUGGggGCGGaGGCCAC-GCCGg -3'
miRNA:   3'- acGGACCauUGCCcCCGGUGuUGGCa -5'
28831 5' -58.8 NC_006146.1 + 58432 0.67 0.782565
Target:  5'- cGCCggGGUGGgucUGGGGGUCACAGa-GUa -3'
miRNA:   3'- aCGGa-CCAUU---GCCCCCGGUGUUggCA- -5'
28831 5' -58.8 NC_006146.1 + 155791 0.67 0.773469
Target:  5'- aGCCgcucGGUGGCccuGGGGGCC---ACCGa -3'
miRNA:   3'- aCGGa---CCAUUG---CCCCCGGuguUGGCa -5'
28831 5' -58.8 NC_006146.1 + 90052 0.67 0.773468
Target:  5'- cGCggGGUGcguuaugcACGuGGGCCAUGGCCGUg -3'
miRNA:   3'- aCGgaCCAU--------UGCcCCCGGUGUUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 149958 0.67 0.772552
Target:  5'- cGCCcaggcguUGGgagUGGGGGCCAgGGCCu- -3'
miRNA:   3'- aCGG-------ACCauuGCCCCCGGUgUUGGca -5'
28831 5' -58.8 NC_006146.1 + 61947 0.67 0.767952
Target:  5'- gGCCcGGUGaucaaggcucaggacACGGGGGCCGuugaGGCCc- -3'
miRNA:   3'- aCGGaCCAU---------------UGCCCCCGGUg---UUGGca -5'
28831 5' -58.8 NC_006146.1 + 99189 0.67 0.764251
Target:  5'- aGCCaccaGGUGGCguccgccuccaGGGaGGCCGCGGCCu- -3'
miRNA:   3'- aCGGa---CCAUUG-----------CCC-CCGGUGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 43360 0.67 0.764251
Target:  5'- aGCCcguggcagggggUGGcuUAGCGGGGGCagcaGCGGCUGc -3'
miRNA:   3'- aCGG------------ACC--AUUGCCCCCGg---UGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 51468 0.67 0.764251
Target:  5'- gGUgUGGagaugGGCGGGGGCUGCGGCg-- -3'
miRNA:   3'- aCGgACCa----UUGCCCCCGGUGUUGgca -5'
28831 5' -58.8 NC_006146.1 + 136760 0.67 0.754921
Target:  5'- cGCCgGGgcucCGGGaGGCC-CGGCCGc -3'
miRNA:   3'- aCGGaCCauu-GCCC-CCGGuGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 26285 0.67 0.745488
Target:  5'- aGCCUGG-GugGaGGGGCCgGCAuCUGg -3'
miRNA:   3'- aCGGACCaUugC-CCCCGG-UGUuGGCa -5'
28831 5' -58.8 NC_006146.1 + 2844 0.67 0.745488
Target:  5'- cGCCaGG-AGCGGGGuGCCGguugUGGCCGg -3'
miRNA:   3'- aCGGaCCaUUGCCCC-CGGU----GUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 53014 0.67 0.745488
Target:  5'- gGcCCUGGgccucacGCGGcuGGCCGCGGCCGc -3'
miRNA:   3'- aC-GGACCau-----UGCCc-CCGGUGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 14414 0.67 0.745488
Target:  5'- cGCCguaGaGUuuuACGGGGGgCACAggGCCGa -3'
miRNA:   3'- aCGGa--C-CAu--UGCCCCCgGUGU--UGGCa -5'
28831 5' -58.8 NC_006146.1 + 99072 0.67 0.73596
Target:  5'- gUGCCguaGUggUGGaGGGCCcGCAGCCa- -3'
miRNA:   3'- -ACGGac-CAuuGCC-CCCGG-UGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 123911 0.67 0.735959
Target:  5'- cUGCC-GGUccGACGGGcgcaauuccuGGCgGCGGCCGg -3'
miRNA:   3'- -ACGGaCCA--UUGCCC----------CCGgUGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 71865 0.67 0.735959
Target:  5'- cGCCgGGcccugGGGGGCCucuacACGGCCGUc -3'
miRNA:   3'- aCGGaCCauug-CCCCCGG-----UGUUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 145957 0.67 0.735001
Target:  5'- gGCCUGGc--CGGGucuaagguggccuGGCCugGGCUGUg -3'
miRNA:   3'- aCGGACCauuGCCC-------------CCGGugUUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 152113 0.67 0.735001
Target:  5'- gGCCUGGc--CGGGucuaagguggccuGGCCugGGCUGUg -3'
miRNA:   3'- aCGGACCauuGCCC-------------CCGGugUUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 149035 0.67 0.735001
Target:  5'- gGCCUGGc--CGGGucuaagguggccuGGCCugGGCUGUg -3'
miRNA:   3'- aCGGACCauuGCCC-------------CCGGugUUGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.