miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28831 5' -58.8 NC_006146.1 + 2479 0.69 0.637326
Target:  5'- gGUgUGGccGGCGGGGGCagGCAGCUGg -3'
miRNA:   3'- aCGgACCa-UUGCCCCCGg-UGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 2844 0.67 0.745488
Target:  5'- cGCCaGG-AGCGGGGuGCCGguugUGGCCGg -3'
miRNA:   3'- aCGGaCCaUUGCCCC-CGGU----GUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 3260 0.69 0.657339
Target:  5'- gGaCCUGGgGACGGcgcaGGCCACgAGCCGg -3'
miRNA:   3'- aC-GGACCaUUGCCc---CCGGUG-UUGGCa -5'
28831 5' -58.8 NC_006146.1 + 3842 0.73 0.427185
Target:  5'- aGCCggcgGGUAAgGGGGGUCGCccugGACCa- -3'
miRNA:   3'- aCGGa---CCAUUgCCCCCGGUG----UUGGca -5'
28831 5' -58.8 NC_006146.1 + 4866 0.69 0.667319
Target:  5'- gGCa-GG-GGCGGGGGCCACAGgCa- -3'
miRNA:   3'- aCGgaCCaUUGCCCCCGGUGUUgGca -5'
28831 5' -58.8 NC_006146.1 + 6556 0.7 0.567533
Target:  5'- aUGaCCgUGGUAACGGGGGCaACgGGCCa- -3'
miRNA:   3'- -AC-GG-ACCAUUGCCCCCGgUG-UUGGca -5'
28831 5' -58.8 NC_006146.1 + 9468 0.71 0.547888
Target:  5'- cGCCUugGGUuccCGcGGGGCCACAcCCGc -3'
miRNA:   3'- aCGGA--CCAuu-GC-CCCCGGUGUuGGCa -5'
28831 5' -58.8 NC_006146.1 + 10465 0.76 0.276194
Target:  5'- cGCCUucGUGAUGGGGGCCACcGCCc- -3'
miRNA:   3'- aCGGAc-CAUUGCCCCCGGUGuUGGca -5'
28831 5' -58.8 NC_006146.1 + 10997 0.69 0.617298
Target:  5'- cUGCC-GGUGACGGGGGUCuucuuUGACgGa -3'
miRNA:   3'- -ACGGaCCAUUGCCCCCGGu----GUUGgCa -5'
28831 5' -58.8 NC_006146.1 + 12704 0.68 0.716651
Target:  5'- aGCCUGGccauUGACaaGGGGGUCcugACGGCCa- -3'
miRNA:   3'- aCGGACC----AUUG--CCCCCGG---UGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 14414 0.67 0.745488
Target:  5'- cGCCguaGaGUuuuACGGGGGgCACAggGCCGa -3'
miRNA:   3'- aCGGa--C-CAu--UGCCCCCgGUGU--UGGCa -5'
28831 5' -58.8 NC_006146.1 + 14844 0.66 0.817576
Target:  5'- gGCCcgGGgccGCGGGaGGCCgaggggGCAGCCa- -3'
miRNA:   3'- aCGGa-CCau-UGCCC-CCGG------UGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 15937 0.66 0.817576
Target:  5'- cGCCUGGgcgaGGCuGGGuGGCUggGCAgGCCGg -3'
miRNA:   3'- aCGGACCa---UUG-CCC-CCGG--UGU-UGGCa -5'
28831 5' -58.8 NC_006146.1 + 18861 0.75 0.330948
Target:  5'- cUGCCggGGUGguggacguGCGGGGGCCuCAGCCc- -3'
miRNA:   3'- -ACGGa-CCAU--------UGCCCCCGGuGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 19014 0.66 0.817576
Target:  5'- cGCCUGGgcgaGGCuGGGuGGCUggGCAgGCCGg -3'
miRNA:   3'- aCGGACCa---UUG-CCC-CCGG--UGU-UGGCa -5'
28831 5' -58.8 NC_006146.1 + 22092 0.66 0.817576
Target:  5'- cGCCUGGgcgaGGCuGGGuGGCUggGCAgGCCGg -3'
miRNA:   3'- aCGGACCa---UUG-CCC-CCGG--UGU-UGGCa -5'
28831 5' -58.8 NC_006146.1 + 24097 0.66 0.800362
Target:  5'- cGCCUGGgacGCGGgucgaGGGCgGCuggcACCGg -3'
miRNA:   3'- aCGGACCau-UGCC-----CCCGgUGu---UGGCa -5'
28831 5' -58.8 NC_006146.1 + 25170 0.66 0.817576
Target:  5'- cGCCUGGgcgaGGCuGGGuGGCUggGCAgGCCGg -3'
miRNA:   3'- aCGGACCa---UUG-CCC-CCGG--UGU-UGGCa -5'
28831 5' -58.8 NC_006146.1 + 26285 0.67 0.745488
Target:  5'- aGCCUGG-GugGaGGGGCCgGCAuCUGg -3'
miRNA:   3'- aCGGACCaUugC-CCCCGG-UGUuGGCa -5'
28831 5' -58.8 NC_006146.1 + 28248 0.66 0.817576
Target:  5'- cGCCUGGgcgaGGCuGGGuGGCUggGCAgGCCGg -3'
miRNA:   3'- aCGGACCa---UUG-CCC-CCGG--UGU-UGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.