miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28831 5' -58.8 NC_006146.1 + 32145 0.68 0.697067
Target:  5'- gUGCUggGGUGGgGGauGGGCUcagGCAACCGUa -3'
miRNA:   3'- -ACGGa-CCAUUgCC--CCCGG---UGUUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 33147 0.66 0.825945
Target:  5'- cGCUccgGGUGGgGGGuGGCC-CGGCUGg -3'
miRNA:   3'- aCGGa--CCAUUgCCC-CCGGuGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 33271 0.66 0.825945
Target:  5'- cGCUccgGGUGGgGGGuGGCC-CGGCUGg -3'
miRNA:   3'- aCGGa--CCAUUgCCC-CCGGuGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 34082 0.69 0.66732
Target:  5'- gGCCgggGGUccCGGGGggcaGCCGCGACCc- -3'
miRNA:   3'- aCGGa--CCAuuGCCCC----CGGUGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 38266 0.7 0.567534
Target:  5'- gUGCCUGG-AACaucuGGagcGGGCCACAcuGCCGg -3'
miRNA:   3'- -ACGGACCaUUG----CC---CCCGGUGU--UGGCa -5'
28831 5' -58.8 NC_006146.1 + 38457 0.69 0.637326
Target:  5'- cUGCCUccggGGUGACGGGuGCCAU--CCGg -3'
miRNA:   3'- -ACGGA----CCAUUGCCCcCGGUGuuGGCa -5'
28831 5' -58.8 NC_006146.1 + 40030 0.71 0.528461
Target:  5'- gGCCUGc---UGGGGGCCGUAGCCGa -3'
miRNA:   3'- aCGGACcauuGCCCCCGGUGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 40468 0.71 0.538144
Target:  5'- gGCCUGGUGggugaAgGGGGGCagaGgGGCCGc -3'
miRNA:   3'- aCGGACCAU-----UgCCCCCGg--UgUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 43059 0.69 0.667319
Target:  5'- cGCCUGGcgguugaGGGGuGCCAgCGACUGg -3'
miRNA:   3'- aCGGACCauug---CCCC-CGGU-GUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 43360 0.67 0.764251
Target:  5'- aGCCcguggcagggggUGGcuUAGCGGGGGCagcaGCGGCUGc -3'
miRNA:   3'- aCGG------------ACC--AUUGCCCCCGg---UGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 43736 0.69 0.657339
Target:  5'- aUGuCCUGGU--CGGGGGUUGCGGCgGa -3'
miRNA:   3'- -AC-GGACCAuuGCCCCCGGUGUUGgCa -5'
28831 5' -58.8 NC_006146.1 + 44301 0.73 0.401596
Target:  5'- cGCCaaaccGGUAGUGGGGGCUGgGGCCGUg -3'
miRNA:   3'- aCGGa----CCAUUGCCCCCGGUgUUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 44732 0.66 0.791532
Target:  5'- gGCCUGau-GCGGuGGCCGCGGgCGg -3'
miRNA:   3'- aCGGACcauUGCCcCCGGUGUUgGCa -5'
28831 5' -58.8 NC_006146.1 + 45521 0.67 0.782565
Target:  5'- gGCCacGGU---GGGGGCCugGGCCu- -3'
miRNA:   3'- aCGGa-CCAuugCCCCCGGugUUGGca -5'
28831 5' -58.8 NC_006146.1 + 47083 0.68 0.70689
Target:  5'- cGCCUGacgaaGACGGuGGGCUGC-GCCGUc -3'
miRNA:   3'- aCGGACca---UUGCC-CCCGGUGuUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 47527 0.66 0.825945
Target:  5'- aGCCaGGUuGCGGGGcCCcCGGCCa- -3'
miRNA:   3'- aCGGaCCAuUGCCCCcGGuGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 48000 0.69 0.65134
Target:  5'- gUGgCUGGUGGCGGGaGGCUugGCGggggaggcacggcggGCCGg -3'
miRNA:   3'- -ACgGACCAUUGCCC-CCGG--UGU---------------UGGCa -5'
28831 5' -58.8 NC_006146.1 + 48233 0.69 0.645336
Target:  5'- cGCCUGGgugagcgccgcGCGGaGGGCCcccGCcGCCGUc -3'
miRNA:   3'- aCGGACCau---------UGCC-CCCGG---UGuUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 49542 0.67 0.782565
Target:  5'- -cUCUGGggGCGGaGGCCAC-GCCGg -3'
miRNA:   3'- acGGACCauUGCCcCCGGUGuUGGCa -5'
28831 5' -58.8 NC_006146.1 + 51468 0.67 0.764251
Target:  5'- gGUgUGGagaugGGCGGGGGCUGCGGCg-- -3'
miRNA:   3'- aCGgACCa----UUGCCCCCGGUGUUGgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.