miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28831 5' -58.8 NC_006146.1 + 44301 0.73 0.401596
Target:  5'- cGCCaaaccGGUAGUGGGGGCUGgGGCCGUg -3'
miRNA:   3'- aCGGa----CCAUUGCCCCCGGUgUUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 2479 0.69 0.637326
Target:  5'- gGUgUGGccGGCGGGGGCagGCAGCUGg -3'
miRNA:   3'- aCGgACCa-UUGCCCCCGg-UGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 48233 0.69 0.645336
Target:  5'- cGCCUGGgugagcgccgcGCGGaGGGCCcccGCcGCCGUc -3'
miRNA:   3'- aCGGACCau---------UGCC-CCCGG---UGuUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 53047 0.65 0.833333
Target:  5'- cGCCgagaGGUAAgGGGGGCggguggggaacacCGCcACCGc -3'
miRNA:   3'- aCGGa---CCAUUgCCCCCG-------------GUGuUGGCa -5'
28831 5' -58.8 NC_006146.1 + 113703 0.71 0.528461
Target:  5'- gGCCcGGgGACGGcGGCgGCAGCCGg -3'
miRNA:   3'- aCGGaCCaUUGCCcCCGgUGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 97846 0.71 0.538144
Target:  5'- cGaCCUGGaggaGGGGGCCGCcgaccccgGGCCGUg -3'
miRNA:   3'- aC-GGACCauugCCCCCGGUG--------UUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 9468 0.71 0.547888
Target:  5'- cGCCUugGGUuccCGcGGGGCCACAcCCGc -3'
miRNA:   3'- aCGGA--CCAuu-GC-CCCCGGUGUuGGCa -5'
28831 5' -58.8 NC_006146.1 + 38266 0.7 0.567534
Target:  5'- gUGCCUGG-AACaucuGGagcGGGCCACAcuGCCGg -3'
miRNA:   3'- -ACGGACCaUUG----CC---CCCGGUGU--UGGCa -5'
28831 5' -58.8 NC_006146.1 + 10997 0.69 0.617298
Target:  5'- cUGCC-GGUGACGGGGGUCuucuuUGACgGa -3'
miRNA:   3'- -ACGGaCCAUUGCCCCCGGu----GUUGgCa -5'
28831 5' -58.8 NC_006146.1 + 83631 0.69 0.62731
Target:  5'- aGUCaauUGGUGGCGGGGGCUcuGCgGGCCa- -3'
miRNA:   3'- aCGG---ACCAUUGCCCCCGG--UG-UUGGca -5'
28831 5' -58.8 NC_006146.1 + 168344 0.69 0.617298
Target:  5'- gGCCUGG---CGGGGGCCAgcGCgGg -3'
miRNA:   3'- aCGGACCauuGCCCCCGGUguUGgCa -5'
28831 5' -58.8 NC_006146.1 + 147729 0.7 0.607296
Target:  5'- gGCCUGGgUAAUaGcGGGCCGCGAgCGa -3'
miRNA:   3'- aCGGACC-AUUGcC-CCCGGUGUUgGCa -5'
28831 5' -58.8 NC_006146.1 + 149796 0.73 0.409171
Target:  5'- gGCCUccagGGaGAUGGGGGCCACAAacaggcuCCGg -3'
miRNA:   3'- aCGGA----CCaUUGCCCCCGGUGUU-------GGCa -5'
28831 5' -58.8 NC_006146.1 + 169276 0.69 0.617298
Target:  5'- gGCCUGG---CGGGGGCCAgcGCgGg -3'
miRNA:   3'- aCGGACCauuGCCCCCGGUguUGgCa -5'
28831 5' -58.8 NC_006146.1 + 56842 0.73 0.427185
Target:  5'- gGCCucUGGcGGCGGGGGCgGCAGCUu- -3'
miRNA:   3'- aCGG--ACCaUUGCCCCCGgUGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 137914 0.7 0.567534
Target:  5'- gGCCgggGGUucCGGGGgcaGCCGCGACCc- -3'
miRNA:   3'- aCGGa--CCAuuGCCCC---CGGUGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 170207 0.69 0.617298
Target:  5'- gGCCUGG---CGGGGGCCAgcGCgGg -3'
miRNA:   3'- aCGGACCauuGCCCCCGGUguUGgCa -5'
28831 5' -58.8 NC_006146.1 + 38457 0.69 0.637326
Target:  5'- cUGCCUccggGGUGACGGGuGCCAU--CCGg -3'
miRNA:   3'- -ACGGA----CCAUUGCCCcCGGUGuuGGCa -5'
28831 5' -58.8 NC_006146.1 + 154660 0.72 0.490427
Target:  5'- cGCCggcugcaccgUGGUGGCGGGGGgCGCugcuGCUGg -3'
miRNA:   3'- aCGG----------ACCAUUGCCCCCgGUGu---UGGCa -5'
28831 5' -58.8 NC_006146.1 + 70214 0.71 0.547888
Target:  5'- cGCCgGGUGcCGaGGGCCGCGAgCGUu -3'
miRNA:   3'- aCGGaCCAUuGCcCCCGGUGUUgGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.