miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28831 5' -58.8 NC_006146.1 + 3260 0.69 0.657339
Target:  5'- gGaCCUGGgGACGGcgcaGGCCACgAGCCGg -3'
miRNA:   3'- aC-GGACCaUUGCCc---CCGGUG-UUGGCa -5'
28831 5' -58.8 NC_006146.1 + 48233 0.69 0.645336
Target:  5'- cGCCUGGgugagcgccgcGCGGaGGGCCcccGCcGCCGUc -3'
miRNA:   3'- aCGGACCau---------UGCC-CCCGG---UGuUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 147729 0.7 0.607296
Target:  5'- gGCCUGGgUAAUaGcGGGCCGCGAgCGa -3'
miRNA:   3'- aCGGACC-AUUGcC-CCCGGUGUUgGCa -5'
28831 5' -58.8 NC_006146.1 + 154660 0.72 0.490427
Target:  5'- cGCCggcugcaccgUGGUGGCGGGGGgCGCugcuGCUGg -3'
miRNA:   3'- aCGG----------ACCAUUGCCCCCgGUGu---UGGCa -5'
28831 5' -58.8 NC_006146.1 + 61947 0.67 0.767952
Target:  5'- gGCCcGGUGaucaaggcucaggacACGGGGGCCGuugaGGCCc- -3'
miRNA:   3'- aCGGaCCAU---------------UGCCCCCGGUg---UUGGca -5'
28831 5' -58.8 NC_006146.1 + 137789 0.68 0.723445
Target:  5'- gGCCUGGUccgccggauccgcuuCGGGGGuCCGCcgguCCGg -3'
miRNA:   3'- aCGGACCAuu-------------GCCCCC-GGUGuu--GGCa -5'
28831 5' -58.8 NC_006146.1 + 2479 0.69 0.637326
Target:  5'- gGUgUGGccGGCGGGGGCagGCAGCUGg -3'
miRNA:   3'- aCGgACCa-UUGCCCCCGg-UGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 56842 0.73 0.427185
Target:  5'- gGCCucUGGcGGCGGGGGCgGCAGCUu- -3'
miRNA:   3'- aCGG--ACCaUUGCCCCCGgUGUUGGca -5'
28831 5' -58.8 NC_006146.1 + 47083 0.68 0.70689
Target:  5'- cGCCUGacgaaGACGGuGGGCUGC-GCCGUc -3'
miRNA:   3'- aCGGACca---UUGCC-CCCGGUGuUGGCA- -5'
28831 5' -58.8 NC_006146.1 + 149796 0.73 0.409171
Target:  5'- gGCCUccagGGaGAUGGGGGCCACAAacaggcuCCGg -3'
miRNA:   3'- aCGGA----CCaUUGCCCCCGGUGUU-------GGCa -5'
28831 5' -58.8 NC_006146.1 + 38457 0.69 0.637326
Target:  5'- cUGCCUccggGGUGACGGGuGCCAU--CCGg -3'
miRNA:   3'- -ACGGA----CCAUUGCCCcCGGUGuuGGCa -5'
28831 5' -58.8 NC_006146.1 + 43736 0.69 0.657339
Target:  5'- aUGuCCUGGU--CGGGGGUUGCGGCgGa -3'
miRNA:   3'- -AC-GGACCAuuGCCCCCGGUGUUGgCa -5'
28831 5' -58.8 NC_006146.1 + 169276 0.69 0.617298
Target:  5'- gGCCUGG---CGGGGGCCAgcGCgGg -3'
miRNA:   3'- aCGGACCauuGCCCCCGGUguUGgCa -5'
28831 5' -58.8 NC_006146.1 + 10997 0.69 0.617298
Target:  5'- cUGCC-GGUGACGGGGGUCuucuuUGACgGa -3'
miRNA:   3'- -ACGGaCCAUUGCCCCCGGu----GUUGgCa -5'
28831 5' -58.8 NC_006146.1 + 9468 0.71 0.547888
Target:  5'- cGCCUugGGUuccCGcGGGGCCACAcCCGc -3'
miRNA:   3'- aCGGA--CCAuu-GC-CCCCGGUGUuGGCa -5'
28831 5' -58.8 NC_006146.1 + 113703 0.71 0.528461
Target:  5'- gGCCcGGgGACGGcGGCgGCAGCCGg -3'
miRNA:   3'- aCGGaCCaUUGCCcCCGgUGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 45521 0.67 0.782565
Target:  5'- gGCCacGGU---GGGGGCCugGGCCu- -3'
miRNA:   3'- aCGGa-CCAuugCCCCCGGugUUGGca -5'
28831 5' -58.8 NC_006146.1 + 149958 0.67 0.772552
Target:  5'- cGCCcaggcguUGGgagUGGGGGCCAgGGCCu- -3'
miRNA:   3'- aCGG-------ACCauuGCCCCCGGUgUUGGca -5'
28831 5' -58.8 NC_006146.1 + 43360 0.67 0.764251
Target:  5'- aGCCcguggcagggggUGGcuUAGCGGGGGCagcaGCGGCUGc -3'
miRNA:   3'- aCGG------------ACC--AUUGCCCCCGg---UGUUGGCa -5'
28831 5' -58.8 NC_006146.1 + 99072 0.67 0.73596
Target:  5'- gUGCCguaGUggUGGaGGGCCcGCAGCCa- -3'
miRNA:   3'- -ACGGac-CAuuGCC-CCCGG-UGUUGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.