miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 3' -58.9 NC_006146.1 + 102276 0.66 0.841456
Target:  5'- uCGUuGGUcuCCCCGCCaGCCcuccCUUCCu -3'
miRNA:   3'- -GCGuCCGu-GGGGCGG-CGGuaa-GAAGG- -5'
28832 3' -58.9 NC_006146.1 + 28049 0.66 0.825327
Target:  5'- gGCAGGUggcugcaauaGCCaaGCaCGCCAUgggCUUCg -3'
miRNA:   3'- gCGUCCG----------UGGggCG-GCGGUAa--GAAGg -5'
28832 3' -58.9 NC_006146.1 + 162283 0.66 0.825327
Target:  5'- gGCgAGGaCACCCagggGCCGUCGagUCUUUCu -3'
miRNA:   3'- gCG-UCC-GUGGGg---CGGCGGUa-AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 161202 0.66 0.817011
Target:  5'- gGCAacuGGCACCCCG-UGCCccaCUUCa -3'
miRNA:   3'- gCGU---CCGUGGGGCgGCGGuaaGAAGg -5'
28832 3' -58.9 NC_006146.1 + 23727 0.66 0.817011
Target:  5'- gGCgaagGGGCGCCggucugcgCCGCCGCCGggUCaacugCCg -3'
miRNA:   3'- gCG----UCCGUGG--------GGCGGCGGUa-AGaa---GG- -5'
28832 3' -58.9 NC_006146.1 + 167081 0.66 0.817011
Target:  5'- gCGgGGGUGCCCCGCCugGCCugac--CCa -3'
miRNA:   3'- -GCgUCCGUGGGGCGG--CGGuaagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 127626 0.66 0.817011
Target:  5'- gGC-GGCACCgccggcCCGCUGCC--UCUugUCCa -3'
miRNA:   3'- gCGuCCGUGG------GGCGGCGGuaAGA--AGG- -5'
28832 3' -58.9 NC_006146.1 + 77006 0.66 0.808536
Target:  5'- uGCuGGCcccCCCUGCCGCaaa--UUCCg -3'
miRNA:   3'- gCGuCCGu--GGGGCGGCGguaagAAGG- -5'
28832 3' -58.9 NC_006146.1 + 119002 0.66 0.808536
Target:  5'- uCGgAGGC-CCCCGCCGaCGcagCcUCCa -3'
miRNA:   3'- -GCgUCCGuGGGGCGGCgGUaa-GaAGG- -5'
28832 3' -58.9 NC_006146.1 + 76812 0.66 0.825327
Target:  5'- gGgGGGUcuacgccuucaGCCaCgGCgGCCAUUCUUCUg -3'
miRNA:   3'- gCgUCCG-----------UGG-GgCGgCGGUAAGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 15780 0.66 0.825327
Target:  5'- cCGCGGGgACCuuGCCccaCCAgaaggUgUUCCu -3'
miRNA:   3'- -GCGUCCgUGGggCGGc--GGUa----AgAAGG- -5'
28832 3' -58.9 NC_006146.1 + 114324 0.66 0.825327
Target:  5'- gGCucGGCGCCCgGCCGCCc--CUg-- -3'
miRNA:   3'- gCGu-CCGUGGGgCGGCGGuaaGAagg -5'
28832 3' -58.9 NC_006146.1 + 2452 0.66 0.841456
Target:  5'- cCGgGGGCGCggCCCGgCGCCAgccCUgCCc -3'
miRNA:   3'- -GCgUCCGUG--GGGCgGCGGUaa-GAaGG- -5'
28832 3' -58.9 NC_006146.1 + 1520 0.66 0.841456
Target:  5'- cCGgGGGCGCggCCCGgCGCCAgccCUgCCc -3'
miRNA:   3'- -GCgUCCGUG--GGGCgGCGGUaa-GAaGG- -5'
28832 3' -58.9 NC_006146.1 + 589 0.66 0.841456
Target:  5'- cCGgGGGCGCggCCCGgCGCCAgccCUgCCc -3'
miRNA:   3'- -GCgUCCGUG--GGGCgGCGGUaa-GAaGG- -5'
28832 3' -58.9 NC_006146.1 + 31822 0.66 0.841456
Target:  5'- -cCAGGCGaggCCCGUgGCCAaaguccagCUUCCg -3'
miRNA:   3'- gcGUCCGUg--GGGCGgCGGUaa------GAAGG- -5'
28832 3' -58.9 NC_006146.1 + 21651 0.66 0.841456
Target:  5'- gGCAcGGCAuUCCCGUgGCCAUUga-CCa -3'
miRNA:   3'- gCGU-CCGU-GGGGCGgCGGUAAgaaGG- -5'
28832 3' -58.9 NC_006146.1 + 10933 0.66 0.833478
Target:  5'- uGCGGGC-UCCUGCgCGCCA--CcUCCu -3'
miRNA:   3'- gCGUCCGuGGGGCG-GCGGUaaGaAGG- -5'
28832 3' -58.9 NC_006146.1 + 31519 0.66 0.829424
Target:  5'- aGCAGGCgaccauuagaggcuGCUCUGCUGCCAgugaguugCCa -3'
miRNA:   3'- gCGUCCG--------------UGGGGCGGCGGUaagaa---GG- -5'
28832 3' -58.9 NC_006146.1 + 126652 0.66 0.825327
Target:  5'- cCGCAGGgGCaauggacaCCGCCGCCcgg---CCa -3'
miRNA:   3'- -GCGUCCgUGg-------GGCGGCGGuaagaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.