miRNA display CGI


Results 1 - 20 of 127 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 3' -58.9 NC_006146.1 + 72048 1.1 0.001469
Target:  5'- gCGCAGGCACCCCGCCGCCAUUCUUCCc -3'
miRNA:   3'- -GCGUCCGUGGGGCGGCGGUAAGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 125753 0.84 0.092326
Target:  5'- aGCGGGCuuGCCCuUGCUGCCAUUCUUCUg -3'
miRNA:   3'- gCGUCCG--UGGG-GCGGCGGUAAGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 106080 0.78 0.222837
Target:  5'- uGCGGGUguuaACCCCcccuguucaccgaaCCGCCAUUCUUCCg -3'
miRNA:   3'- gCGUCCG----UGGGGc-------------GGCGGUAAGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 127272 0.77 0.260159
Target:  5'- gGCGGccaCGCCCCGCCGCCcacucccUCUUCCc -3'
miRNA:   3'- gCGUCc--GUGGGGCGGCGGua-----AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 55480 0.76 0.305148
Target:  5'- cCGCGGGCgagaacgagGCCCgGCCGCCAgcugCcUCCu -3'
miRNA:   3'- -GCGUCCG---------UGGGgCGGCGGUaa--GaAGG- -5'
28832 3' -58.9 NC_006146.1 + 31497 0.76 0.305148
Target:  5'- aGCAGGCAccucCCCCGgCGCCGUgggggcCUUCUc -3'
miRNA:   3'- gCGUCCGU----GGGGCgGCGGUAa-----GAAGG- -5'
28832 3' -58.9 NC_006146.1 + 147121 0.76 0.305148
Target:  5'- aGCGGGC-CCCagacgcgcagGCCGCCAUUCUcggCCg -3'
miRNA:   3'- gCGUCCGuGGGg---------CGGCGGUAAGAa--GG- -5'
28832 3' -58.9 NC_006146.1 + 15340 0.76 0.312041
Target:  5'- gGCGGGCGCCCCGCgcgaGCCcggCU-CCa -3'
miRNA:   3'- gCGUCCGUGGGGCGg---CGGuaaGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 169673 0.76 0.312041
Target:  5'- gGCGGGCGCgcguggCCCGCCcCCGggUCUUCCc -3'
miRNA:   3'- gCGUCCGUG------GGGCGGcGGUa-AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 168741 0.76 0.312041
Target:  5'- gGCGGGCGCgcguggCCCGCCcCCGggUCUUCCc -3'
miRNA:   3'- gCGUCCGUG------GGGCGGcGGUa-AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 167809 0.76 0.312041
Target:  5'- gGCGGGCGCgcguggCCCGCCcCCGggUCUUCCc -3'
miRNA:   3'- gCGUCCGUG------GGGCGGcGGUa-AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 4379 0.75 0.333428
Target:  5'- cCGCGGGCuCCCCagGCCgacGCCAUgaagauuaUCUUCCg -3'
miRNA:   3'- -GCGUCCGuGGGG--CGG---CGGUA--------AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 76973 0.75 0.340791
Target:  5'- aGCGGa-GCCCCGCCGCCGccUUCUacgccUCCg -3'
miRNA:   3'- gCGUCcgUGGGGCGGCGGU--AAGA-----AGG- -5'
28832 3' -58.9 NC_006146.1 + 48249 0.75 0.348272
Target:  5'- gCGCggaGGGC-CCCCGCCGCCGUcCUggCg -3'
miRNA:   3'- -GCG---UCCGuGGGGCGGCGGUAaGAagG- -5'
28832 3' -58.9 NC_006146.1 + 101629 0.75 0.355869
Target:  5'- gCGguGGCAa-CgGCCGCCGUUCgUCCa -3'
miRNA:   3'- -GCguCCGUggGgCGGCGGUAAGaAGG- -5'
28832 3' -58.9 NC_006146.1 + 56588 0.75 0.355869
Target:  5'- gGcCGGGCGCCgagcCCGCCGCCggUCU-CCu -3'
miRNA:   3'- gC-GUCCGUGG----GGCGGCGGuaAGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 41512 0.74 0.378553
Target:  5'- gGCAGGCuuccgGCCCCagaggagGCCGCCg--CUUCCc -3'
miRNA:   3'- gCGUCCG-----UGGGG-------CGGCGGuaaGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 117119 0.74 0.398872
Target:  5'- gCGCGGGCcgaggcccucguccgGCgagaccuccgCCCGCCGCCcgUCUUCg -3'
miRNA:   3'- -GCGUCCG---------------UG----------GGGCGGCGGuaAGAAGg -5'
28832 3' -58.9 NC_006146.1 + 71309 0.73 0.412237
Target:  5'- aCGCAGaGCACCgCgGCCccaaGCCcgUCUUCUa -3'
miRNA:   3'- -GCGUC-CGUGG-GgCGG----CGGuaAGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 49657 0.73 0.421585
Target:  5'- aGCGGGCGCCCgGCUGCUuacacuugagcaUUCCg -3'
miRNA:   3'- gCGUCCGUGGGgCGGCGGuaag--------AAGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.