Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28832 | 3' | -58.9 | NC_006146.1 | + | 72048 | 1.1 | 0.001469 |
Target: 5'- gCGCAGGCACCCCGCCGCCAUUCUUCCc -3' miRNA: 3'- -GCGUCCGUGGGGCGGCGGUAAGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 125753 | 0.84 | 0.092326 |
Target: 5'- aGCGGGCuuGCCCuUGCUGCCAUUCUUCUg -3' miRNA: 3'- gCGUCCG--UGGG-GCGGCGGUAAGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 106080 | 0.78 | 0.222837 |
Target: 5'- uGCGGGUguuaACCCCcccuguucaccgaaCCGCCAUUCUUCCg -3' miRNA: 3'- gCGUCCG----UGGGGc-------------GGCGGUAAGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 127272 | 0.77 | 0.260159 |
Target: 5'- gGCGGccaCGCCCCGCCGCCcacucccUCUUCCc -3' miRNA: 3'- gCGUCc--GUGGGGCGGCGGua-----AGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 55480 | 0.76 | 0.305148 |
Target: 5'- cCGCGGGCgagaacgagGCCCgGCCGCCAgcugCcUCCu -3' miRNA: 3'- -GCGUCCG---------UGGGgCGGCGGUaa--GaAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 31497 | 0.76 | 0.305148 |
Target: 5'- aGCAGGCAccucCCCCGgCGCCGUgggggcCUUCUc -3' miRNA: 3'- gCGUCCGU----GGGGCgGCGGUAa-----GAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 147121 | 0.76 | 0.305148 |
Target: 5'- aGCGGGC-CCCagacgcgcagGCCGCCAUUCUcggCCg -3' miRNA: 3'- gCGUCCGuGGGg---------CGGCGGUAAGAa--GG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 15340 | 0.76 | 0.312041 |
Target: 5'- gGCGGGCGCCCCGCgcgaGCCcggCU-CCa -3' miRNA: 3'- gCGUCCGUGGGGCGg---CGGuaaGAaGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 169673 | 0.76 | 0.312041 |
Target: 5'- gGCGGGCGCgcguggCCCGCCcCCGggUCUUCCc -3' miRNA: 3'- gCGUCCGUG------GGGCGGcGGUa-AGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 168741 | 0.76 | 0.312041 |
Target: 5'- gGCGGGCGCgcguggCCCGCCcCCGggUCUUCCc -3' miRNA: 3'- gCGUCCGUG------GGGCGGcGGUa-AGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 167809 | 0.76 | 0.312041 |
Target: 5'- gGCGGGCGCgcguggCCCGCCcCCGggUCUUCCc -3' miRNA: 3'- gCGUCCGUG------GGGCGGcGGUa-AGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 4379 | 0.75 | 0.333428 |
Target: 5'- cCGCGGGCuCCCCagGCCgacGCCAUgaagauuaUCUUCCg -3' miRNA: 3'- -GCGUCCGuGGGG--CGG---CGGUA--------AGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 76973 | 0.75 | 0.340791 |
Target: 5'- aGCGGa-GCCCCGCCGCCGccUUCUacgccUCCg -3' miRNA: 3'- gCGUCcgUGGGGCGGCGGU--AAGA-----AGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 48249 | 0.75 | 0.348272 |
Target: 5'- gCGCggaGGGC-CCCCGCCGCCGUcCUggCg -3' miRNA: 3'- -GCG---UCCGuGGGGCGGCGGUAaGAagG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 101629 | 0.75 | 0.355869 |
Target: 5'- gCGguGGCAa-CgGCCGCCGUUCgUCCa -3' miRNA: 3'- -GCguCCGUggGgCGGCGGUAAGaAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 56588 | 0.75 | 0.355869 |
Target: 5'- gGcCGGGCGCCgagcCCGCCGCCggUCU-CCu -3' miRNA: 3'- gC-GUCCGUGG----GGCGGCGGuaAGAaGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 41512 | 0.74 | 0.378553 |
Target: 5'- gGCAGGCuuccgGCCCCagaggagGCCGCCg--CUUCCc -3' miRNA: 3'- gCGUCCG-----UGGGG-------CGGCGGuaaGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 117119 | 0.74 | 0.398872 |
Target: 5'- gCGCGGGCcgaggcccucguccgGCgagaccuccgCCCGCCGCCcgUCUUCg -3' miRNA: 3'- -GCGUCCG---------------UG----------GGGCGGCGGuaAGAAGg -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 71309 | 0.73 | 0.412237 |
Target: 5'- aCGCAGaGCACCgCgGCCccaaGCCcgUCUUCUa -3' miRNA: 3'- -GCGUC-CGUGG-GgCGG----CGGuaAGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 49657 | 0.73 | 0.421585 |
Target: 5'- aGCGGGCGCCCgGCUGCUuacacuugagcaUUCCg -3' miRNA: 3'- gCGUCCGUGGGgCGGCGGuaag--------AAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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