miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 3' -58.9 NC_006146.1 + 125753 0.84 0.092326
Target:  5'- aGCGGGCuuGCCCuUGCUGCCAUUCUUCUg -3'
miRNA:   3'- gCGUCCG--UGGG-GCGGCGGUAAGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 34205 0.72 0.482975
Target:  5'- gGCAGGgACCUcgCGCCGCCcg-CUUCa -3'
miRNA:   3'- gCGUCCgUGGG--GCGGCGGuaaGAAGg -5'
28832 3' -58.9 NC_006146.1 + 31542 0.72 0.495025
Target:  5'- aGCAGGCACCCCccccggcGCCGCCc--CUaacaucaccagaacaUCCc -3'
miRNA:   3'- gCGUCCGUGGGG-------CGGCGGuaaGA---------------AGG- -5'
28832 3' -58.9 NC_006146.1 + 102276 0.66 0.841456
Target:  5'- uCGUuGGUcuCCCCGCCaGCCcuccCUUCCu -3'
miRNA:   3'- -GCGuCCGu-GGGGCGG-CGGuaa-GAAGG- -5'
28832 3' -58.9 NC_006146.1 + 55480 0.76 0.305148
Target:  5'- cCGCGGGCgagaacgagGCCCgGCCGCCAgcugCcUCCu -3'
miRNA:   3'- -GCGUCCG---------UGGGgCGGCGGUaa--GaAGG- -5'
28832 3' -58.9 NC_006146.1 + 147121 0.76 0.305148
Target:  5'- aGCGGGC-CCCagacgcgcagGCCGCCAUUCUcggCCg -3'
miRNA:   3'- gCGUCCGuGGGg---------CGGCGGUAAGAa--GG- -5'
28832 3' -58.9 NC_006146.1 + 168741 0.76 0.312041
Target:  5'- gGCGGGCGCgcguggCCCGCCcCCGggUCUUCCc -3'
miRNA:   3'- gCGUCCGUG------GGGCGGcGGUa-AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 169673 0.76 0.312041
Target:  5'- gGCGGGCGCgcguggCCCGCCcCCGggUCUUCCc -3'
miRNA:   3'- gCGUCCGUG------GGGCGGcGGUa-AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 56588 0.75 0.355869
Target:  5'- gGcCGGGCGCCgagcCCGCCGCCggUCU-CCu -3'
miRNA:   3'- gC-GUCCGUGG----GGCGGCGGuaAGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 33169 0.72 0.482975
Target:  5'- gGCuGGGCACCgCCgcGCCGCCGcUCggUCCu -3'
miRNA:   3'- gCG-UCCGUGG-GG--CGGCGGUaAGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 41512 0.74 0.378553
Target:  5'- gGCAGGCuuccgGCCCCagaggagGCCGCCg--CUUCCc -3'
miRNA:   3'- gCGUCCG-----UGGGG-------CGGCGGuaaGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 48249 0.75 0.348272
Target:  5'- gCGCggaGGGC-CCCCGCCGCCGUcCUggCg -3'
miRNA:   3'- -GCG---UCCGuGGGGCGGCGGUAaGAagG- -5'
28832 3' -58.9 NC_006146.1 + 106080 0.78 0.222837
Target:  5'- uGCGGGUguuaACCCCcccuguucaccgaaCCGCCAUUCUUCCg -3'
miRNA:   3'- gCGUCCG----UGGGGc-------------GGCGGUAAGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 127841 0.73 0.438028
Target:  5'- uCGCuGGCACCCCucaaCCGCCAggCggcguaUCCg -3'
miRNA:   3'- -GCGuCCGUGGGGc---GGCGGUaaGa-----AGG- -5'
28832 3' -58.9 NC_006146.1 + 127272 0.77 0.260159
Target:  5'- gGCGGccaCGCCCCGCCGCCcacucccUCUUCCc -3'
miRNA:   3'- gCGUCc--GUGGGGCGGCGGua-----AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 4379 0.75 0.333428
Target:  5'- cCGCGGGCuCCCCagGCCgacGCCAUgaagauuaUCUUCCg -3'
miRNA:   3'- -GCGUCCGuGGGG--CGG---CGGUA--------AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 33413 0.73 0.455726
Target:  5'- cCGCcuGGGCACCgcugCGCCGCCGcUCggUCCu -3'
miRNA:   3'- -GCG--UCCGUGGg---GCGGCGGUaAGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 138035 0.72 0.482975
Target:  5'- gGCAGGgACCUcgCGCCGCCcg-CUUCa -3'
miRNA:   3'- gCGUCCgUGGG--GCGGCGGuaaGAAGg -5'
28832 3' -58.9 NC_006146.1 + 31497 0.76 0.305148
Target:  5'- aGCAGGCAccucCCCCGgCGCCGUgggggcCUUCUc -3'
miRNA:   3'- gCGUCCGU----GGGGCgGCGGUAa-----GAAGG- -5'
28832 3' -58.9 NC_006146.1 + 167809 0.76 0.312041
Target:  5'- gGCGGGCGCgcguggCCCGCCcCCGggUCUUCCc -3'
miRNA:   3'- gCGUCCGUG------GGGCGGcGGUa-AGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.